PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g14470
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 345aa    MW: 39217.2 Da    PI: 7.9756
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g14470genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1738.8e-54131421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePw+L++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ ++
  CA03g14470  13 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWHLKEicRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYLSN 110
                 69****************************.9***************954555442556**************************************** PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++ +g++ktLvfy+grap+g+ktdW+mheyrl
  CA03g14470 111 SKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 142
                 ******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-582178IPR003441NAC domain
PROSITE profilePS5100556.09213178IPR003441NAC domain
PfamPF023655.0E-2814142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMMSAAANGQ LSVPPGFRFH PTDEELLYYY LRKKVSYEAI DLDVIREVDL NKLEPWHLKE  60
ICRIGSGPQN EWYFFSHKDK KYPTGTRTNR ATTAGFWKAT GRDKAIYLSN SKRIGMRKTL  120
VFYTGRAPHG QKTDWIMHEY RLDDNTAEVE VLTNFSNKLY FSFSFQNYGW VVCRVFKKKN  180
YTTSFQHEIG DDHEERLHFT DQMKAGSAGG LTEPSKQIMQ QPQAACYGYA SSFDGSMHLP  240
QLLSPDLSLP CPLPPLSNVN NIECSPHHNL LRLTSAGPAS AFNIPQQHDK FSGDWSFLDK  300
LLASNQGALQ SQTTTGDLDN PTSTQKYPIF HHHAFDPDLL KFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4711803170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-97HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567902.10.0PREDICTED: NAC domain-containing protein 76 isoform X1
RefseqXP_016567903.10.0PREDICTED: NAC domain-containing protein 76 isoform X1
SwissprotQ9MA171e-108SMB_ARATH; Protein SOMBRERO
TrEMBLA0A1U8GGQ40.0A0A1U8GGQ4_CAPAN; NAC domain-containing protein 76 isoform X1
TrEMBLA0A2G2ZY000.0A0A2G2ZY00_CAPAN; Protein SOMBRERO
STRINGXP_009619245.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-91NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]