PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g14200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 27006.6 Da PI: 9.7821 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.1 | 1.1e-14 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l ++ ++G +W+ ++ g+ Rt+k+c++rw +yl CA03g14200 17 KGAWSPEEDQKLRTYIMRYGIWNWRQMPKFAGLSRTGKSCRLRWMNYL 64 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 36 | 1.6e-11 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE e ++ ++l ++ W++Ia +++ gRt+ ++k++++++l CA03g14200 70 RGPFTMEEVETVIKTYQKLRSR-WSAIATKLP-GRTDTEVKNFFHTHL 115 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.507 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-27 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-22 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.58E-10 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 13.805 | 69 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-9 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-10 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.11E-6 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-21 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLRVPQQQQQ KGTTIKKGAW SPEEDQKLRT YIMRYGIWNW RQMPKFAGLS RTGKSCRLRW 60 MNYLHPDVKR GPFTMEEVET VIKTYQKLRS RWSAIATKLP GRTDTEVKNF FHTHLKKHLG 120 LKNYDAQLKT RKGHKQTQEN EKENSTQGRL VLETINSSSS LSPDVCSPCS STITCKENQM 180 TDQFTNFSLL VDQQVSEGEN TNIQPCFIPG GSTFSTFDQF DMNSFWFDVL GNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-20 | 15 | 117 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553116.1 | 1e-177 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1U8F398 | 1e-175 | A0A1U8F398_CAPAN; Transcription factor MYB34 | ||||
TrEMBL | A0A2G2ZWL2 | 1e-175 | A0A2G2ZWL2_CAPAN; myb-related protein Myb4-like | ||||
STRING | PGSC0003DMT400021498 | 1e-123 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 7e-47 | myb domain protein 14 |