PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g13530
Common NameLOC107851226
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 273aa    MW: 30591.5 Da    PI: 7.9386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g13530genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-20123173255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta +Aaka+++a+ kl+g
  CA03g13530 123 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAVDAAKAYDRAAFKLRG 173
                 8********.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.4E-33122182IPR001471AP2/ERF domain
CDDcd000184.72E-33122181No hitNo description
SMARTSM003801.3E-38123187IPR001471AP2/ERF domain
PfamPF008479.8E-14123173IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23123183IPR016177DNA-binding domain
PROSITE profilePS5103224.118123181IPR001471AP2/ERF domain
PRINTSPR003671.1E-13124135IPR001471AP2/ERF domain
PRINTSPR003671.1E-13163183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGSPQENCSF DMIRQHLDDI SLMEYYCPEN TLYSQSCESL DQTSVSFETS SNLDDISSFF  60
SSSKTDFGCF EFETKPITSA ATSISSNSPK KRSFNERKPS LNIAVPVKPV VVQKVEVVRE  120
KKHYRGVRQR PWGKFAAEIR DPNRKGTRVW LGTFDTAVDA AKAYDRAAFK LRGSKAILNF  180
PLEVANFKQQ NSTVEVPQQV NSSGSKRARE KEELAINKEM KIEEEERVAQ TAPLTPSNWS  240
TIWDSGNGKG IFEVPPLSPL SPHMSYSQLV MI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-32122184163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7896380.0AY789638.1 Capsicum annuum ethylene responsive element binding protein C4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311615.20.0ethylene-responsive transcription factor 5-like
SwissprotQ404781e-117ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A1U8EWT10.0A0A1U8EWT1_CAPAN; ethylene-responsive transcription factor 5-like
TrEMBLQ32W720.0Q32W72_CAPAN; Ethylene responsive element binding protein C4
STRINGXP_009776184.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-43ERF family protein