PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g13030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 19204.9 Da PI: 9.148 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.6 | 7.8e-19 | 18 | 65 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i nk + +vtfskRr g++KK + +SvLC+a++avi+ s+tgk++ + CA03g13030 18 KIVNKNRLKVTFSKRRGGLFKKENQISVLCGAQIAVIVKSPTGKIFLF 65 789*****************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.71E-24 | 9 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.366 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-27 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-19 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
METSKGKNMG RQKIAIEKIV NKNRLKVTFS KRRGGLFKKE NQISVLCGAQ IAVIVKSPTG 60 KIFLFGNPSV DSVIRQFENR GFGEDEFTAA GEKGELQNSN WWEDVYLENL GLEELKKCRV 120 TMQVLKNNLL KKTNDYDHSG VVNSYDDVLI SNLTLDQFGG LPVCHYDRSN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 2e-13 | 3 | 80 | 10 | 87 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 2e-13 | 3 | 80 | 10 | 87 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567075.1 | 1e-117 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U8G7F5 | 1e-116 | A0A1U8G7F5_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2ZX73 | 1e-116 | A0A2G2ZX73_CAPAN; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009770753.1 | 1e-49 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-22 | AGAMOUS-like 62 |