PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g12790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 20402 Da PI: 9.7553 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4e-09 | 10 | 48 | 9 | 47 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +++ + +++G+g+W+ I+++m Rt+ q+ s+ qky CA03g12790 10 HRRFLMGLEKYGKGDWRNISKKMVISRTPTQVASHAQKY 48 789*********************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.365 | 1 | 53 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-10 | 9 | 52 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.35E-6 | 10 | 48 | No hit | No description |
Pfam | PF00249 | 2.1E-7 | 10 | 48 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-12 | 10 | 52 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 13 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MLIEFFKIWH RRFLMGLEKY GKGDWRNISK KMVISRTPTQ VASHAQKYYQ RQISGGKDKR 60 RPSIHDITTV HFTTDATSQN NLAYNINSLS KEKFYATSSS FQKFTTTTDI VNCWNASLLS 120 EHVDLMDFGS LYGSSPFVAY PYKIASQYWD EHGANSITLS GNPQLQFQST RYQIWD* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016564871.1 | 1e-122 | PREDICTED: transcription factor DIVARICATA-like isoform X1 | ||||
TrEMBL | A0A1U8G0H1 | 1e-120 | A0A1U8G0H1_CAPAN; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2G2ZWT7 | 1e-120 | A0A2G2ZWT7_CAPAN; transcription factor DIVARICATA-like isoform X1 | ||||
STRING | Solyc03g096350.2.1 | 9e-88 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 4e-33 | MYB family protein |