PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g12140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26718.4 Da PI: 8.6739 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.9 | 8.4e-11 | 17 | 48 | 12 | 43 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsst 43 + +R ++KK eE S+LC ++vaviifs++ CA03g12140 17 ILDRRTISLFKKIEEFSILCSVDVAVIIFSPE 48 45567779**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.6E-4 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.554 | 4 | 46 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.19E-13 | 6 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-11 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSRKITSNSD ENVRNSILDR RTISLFKKIE EFSILCSVDV AVIIFSPEKN QPVVWKSSNL 60 TKEVLIRYFS FSEFERIKKL IIHEKYLSKK VDKKKEQVNN IEKMNEEKEI KFLFNQLVQG 120 KCFTDFDSKN IKGLLKFIAT TMDKINERKE QFNLQQQPSH PPNSPSNFKL GEENVTQSPS 180 SIEDLINDMW FVETTMASNQ NFIGLGGESS SKSASMTGDG LNAKDDGRSK DLN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567913.1 | 1e-169 | PREDICTED: agamous-like MADS-box protein AGL86 | ||||
TrEMBL | A0A1U8GGR3 | 1e-168 | A0A1U8GGR3_CAPAN; agamous-like MADS-box protein AGL86 | ||||
STRING | PGSC0003DMT400096078 | 4e-72 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 5e-15 | AGAMOUS-like 48 |