PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g08890
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CO-like
Protein Properties Length: 384aa    MW: 42825.3 Da    PI: 5.466
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g08890genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-071657439
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                + C+ ++++ + l+C+ ++  lC +C  e H+       Ht+
  CA03g08890 16 PLCDFCGDNTALLYCRADSARLCFTCDREVHSTnqlftkHTR 57
                78*****************************66778888875 PP
2zf-B_box19.81.6e-0660103542
    zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  C++++  ++++ C + ++ +C++C  e Hk+      H+++pl
  CA03g08890  60 LCNLCDTSPASILCSTESSVVCQNCDWECHKQvsvssvHERRPL 103
                 6***************************9*99999999998875 PP
3CCT62.11.7e-21332373142
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                 Re a++RYkeK+ktR++eK+irYesRKa+AesR R+KGrF+k
  CA03g08890 332 RETAVSRYKEKKKTRRYEKHIRYESRKARAESRTRIKGRFAK 373
                 99***************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-131360IPR000315B-box-type zinc finger
PROSITE profilePS501199.9681360IPR000315B-box-type zinc finger
PfamPF006436.6E-61557IPR000315B-box-type zinc finger
CDDcd000211.33E-51657No hitNo description
PROSITE profilePS501199.10156103IPR000315B-box-type zinc finger
CDDcd000210.0056560103No hitNo description
SMARTSM003360.4861103IPR000315B-box-type zinc finger
PROSITE profilePS5101714.892332374IPR010402CCT domain
PfamPF062033.7E-16332374IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTELKEDQXQ PQRTRPLCDF CGDNTALLYC RADSARLCFT CDREVHSTNQ LFTKHTRWLL  60
CNLCDTSPAS ILCSTESSVV CQNCDWECHK QVSVSSVHER RPLEGFNGCP CVSELLSLLG  120
FEDLGKKDLS YGGDDVCSGD GGGGYGFSDW VIWDTPSVVS LDDLIASSDS GHNFQAVGVP  180
PLPKNRNAAC GKHKEEILCQ LRELSKLEPN SSDDQDETVP NIGFQYMEPA QNLQSGPKGS  240
GFMQKTEQHV VPSSEGSAFN WCGDSGEFAD QGFSSSLADC FIETKCLFPN RDSDVCDASG  300
RANEEQSHNA PTTETFQMVP KVAHRELNSQ ERETAVSRYK EKKKTRRYEK HIRYESRKAR  360
AESRTRIKGR FAKMDYRDSS VHQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136850.0BT013685.1 Lycopersicon esculentum clone 132507F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565703.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A2G2ZWD50.0A0A2G2ZWD5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000295910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-80B-box type zinc finger protein with CCT domain