PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g08670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HB-other
Protein Properties Length: 514aa    MW: 57968.5 Da    PI: 10.2638
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g08670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.63.2e-06157157
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                +r+R  ++++ ++ +++ F  +  ++++e +e+++  g+t +qV+ +F  +R++ ++
  CA03g08670  1 KRPRDLLNPKTIKYMQSIFSAKDAINKKETREISALFGVTATQVRDFFTAQRTRVRR 57
                799***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.847158IPR001356Homeobox domain
CDDcd000860.00571157No hitNo description
SuperFamilySSF466892.27E-5159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-5157IPR009057Homeodomain-like
Gene3DG3DSA:1.20.930.106.4E-5157248IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476761.57E-6158246IPR017923Transcription factor IIS, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
KRPRDLLNPK TIKYMQSIFS AKDAINKKET REISALFGVT ATQVRDFFTA QRTRVRRFLR  60
FSREKPSISN VSIEGPCPIP LSFDPSSQTE PVPLNSVDPT CTEEGPSCST QDEVLTGIEE  120
RDRHFVDNIL TLMRREETFS GQVKLMDWIL EIQNPSVLYW FLTKGGVMIL AAWLGQAAGE  180
EQTSVLHIIL KVLCHLPLHK AFPVQMSTIL QSVNSLRFYR TPDISNRARI LLARWSKMFA  240
KSQAMKKRNG IKSATDVQDE LLLQQSISEV VGDEIWNSKI EDVEEAHANL CGTSENSRKL  300
DSPLPVKLLT APPDDSNKRL KGALVSSILR FPMNSLTTSE TRERRKVQLM EQPSQRTAGR  360
SIGRPAPATQ GRPLSADDIQ KAKMRAQFMQ SKYGKANNDD SSRVKPQAPN GITSSPDDIL  420
HGAPKLQDRP KVDECEKPNS VSSKGSNQLE NHLKLSFEVE EPLPKRCKRM QIPWRKPPGK  480
FAAVAETSFL LICRFQKRRN GCFFDQLKRR NIS*
Functional Description ? help Back to Top
Source Description
UniProtSeems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565718.10.0PREDICTED: homeobox protein LUMINIDEPENDENS isoform X1
SwissprotQ387961e-130LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBLA0A1U8GAI30.0A0A1U8GAI3_CAPAN; homeobox protein LUMINIDEPENDENS isoform X1
STRINGXP_009604664.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52402123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-125HB-other family protein
Publications ? help Back to Top
  1. Chakrabortee S, et al.
    Luminidependens (LD) is an Arabidopsis protein with prion behavior.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70
    [PMID:27114519]