PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g08640

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 536aa MW: 58893.7 Da PI: 8.9664

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g08640	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CA03g08640 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	15.5	4.9e-05	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ CA03g08640 153 WKCDKCSKKYAVQSDWKAHQKTC 175 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.72E-8	76	99	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	77	99	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.6E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	77	99	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	77	118	148	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.9E-5	141	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.72E-8	148	174	No hit	No description
SMART	SM00355	94	153	173	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MSNISGEEAG SFTSGEEVNL HISNNNISSI TTSNGSNSLS QQQQPLVKKK RNLPGNPDPN 60 AEVVALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTT TEVRKRVYIC 120 PEPTCVHHNP ARALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HQKTCGTREY 180 KCDCGTIFSR RDSFITHRAF CDALAEENNK VNQGLMNNKV NQGLMNSMEA NIHSGQMHEL 240 MSSNASLGLS EFNNFDPKNP LKTLPQELLP IPFKSMNNSM SPGGMFSTTS GNLFGSPRSV 300 ASSSSGLQLG SNIPSNFNYL QDNGKKGVAQ GQGQFSGSSA PMSATALLQK AAQMGATASS 360 SINSPMMQKS FVTSSMAGPD TITRPSPYEN FQMQQDNNNH HPHQQQTNLA AVMNDMGIYS 420 GILMNNDQNN GGFIKNVTEL DRENNSTNDN SSHVMGIRNQ TVLGQNGNDM LTVDFLGVGG 480 TSRPQISNLQ EQQRLEEAIN QQRMQAAAAS MNPFHHQQNI NSQGNSALEK PIWDV*

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MSNISGEEAG SFTSGEEVNL HISNNNISSI TTSNGSNSLS QQQQPLVKKK RNLPGNPDPN  60
AEVVALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTT TEVRKRVYIC  120
PEPTCVHHNP ARALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HQKTCGTREY  180
KCDCGTIFSR RDSFITHRAF CDALAEENNK VNQGLMNNKV NQGLMNSMEA NIHSGQMHEL  240
MSSNASLGLS EFNNFDPKNP LKTLPQELLP IPFKSMNNSM SPGGMFSTTS GNLFGSPRSV  300
ASSSSGLQLG SNIPSNFNYL QDNGKKGVAQ GQGQFSGSSA PMSATALLQK AAQMGATASS  360
SINSPMMQKS FVTSSMAGPD TITRPSPYEN FQMQQDNNNH HPHQQQTNLA AVMNDMGIYS  420
GILMNNDQNN GGFIKNVTEL DRENNSTNDN SSHVMGIRNQ TVLGQNGNDM LTVDFLGVGG  480
TSRPQISNLQ EQQRLEEAIN QQRMQAAAAS MNPFHHQQNI NSQGNSALEK PIWDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	149	218	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-34	149	218	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-159	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016565721.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-112	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1U8G2Y2	0.0	A0A1U8G2Y2_CAPAN; Protein indeterminate-domain 2
TrEMBL	A0A2G2ZW80	0.0	A0A2G2ZW80_CAPAN; protein indeterminate-domain 2-like
STRING	Solyc09g074780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-103	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]