PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g08630
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YB
Protein Properties Length: 148aa    MW: 16703.7 Da    PI: 5.3387
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g08630genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.61.2e-5520115297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +eqdr+lPianv+rimk++lP+nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dy+eplk yl++yrelegek
  CA03g08630  20 KEQDRLLPIANVGRIMKHILPQNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGNLGFDDYAEPLKRYLHRYRELEGEK 115
                 89********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-5415133IPR009072Histone-fold
SuperFamilySSF471132.64E-4122136IPR009072Histone-fold
PfamPF008081.1E-272589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-195371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-197290No hitNo description
PRINTSPR006154.5E-1991109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVDSNNVLRS IDSSEEGGIK EQDRLLPIAN VGRIMKHILP QNAKISKEAK ETMQECVSEF  60
ISFVTGEASD KCHKEKRKTV NGDDICWALG NLGFDDYAEP LKRYLHRYRE LEGEKANQNK  120
AATCNNSTHE EREIDELRNL QGSFYGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4519110192Transcription factor HapC (Eurofung)
4g92_B2e-4519110192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-122HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567970.11e-107PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-62NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2G2ZW851e-106A0A2G2ZW85_CAPAN; Nuclear transcription factor Y subunit B-3
TrEMBLA0A2G3CTQ31e-106A0A2G3CTQ3_CAPCH; Nuclear transcription factor Y subunit B-3
STRINGXP_009775948.17e-83(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-64nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]