PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g08030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GATA | ||||||||
Protein Properties | Length: 122aa MW: 13517 Da PI: 10.5229 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.1 | 1.2e-18 | 23 | 57 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+tt TplWR+gp+g+k+LCnaCG++y kk++ CA03g08030 23 CSGCHTTRTPLWRSGPSGPKSLCNACGIKYNKKRR 57 9*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.8E-14 | 17 | 74 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.413 | 17 | 52 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.38E-13 | 18 | 57 | No hit | No description |
CDD | cd00202 | 2.45E-13 | 22 | 58 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.4E-16 | 22 | 57 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.3E-16 | 23 | 57 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MDLVEVKRSE VEDVNSINKV KSCSGCHTTR TPLWRSGPSG PKSLCNACGI KYNKKRRQIL 60 GLDKGEKKKK KKKISEDKNN RKSGMSLKMK LMALGGKLRE EEEAAILLMA LSCGSFDKLL 120 F* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 72 | KRRQILGLDKGEKKKKKKK |
2 | 66 | 72 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567982.1 | 9e-68 | PREDICTED: GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 7e-27 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A2G2ZVK4 | 8e-81 | A0A2G2ZVK4_CAPAN; GATA transcription factor 15 | ||||
STRING | XP_009758127.1 | 8e-52 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8503 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 3e-16 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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