PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g07840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 563aa MW: 63200.8 Da PI: 6.2047 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 239.3 | 1.7e-73 | 184 | 561 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL cA a++ g+++ +q+lL l+elas +gd++ Rlaa+ ++AL ++l++ +l+++ +++ ++ n++ +l f+++sP++++ + +aN+ CA03g07840 184 EHLLNPCAAAITVGNMNHVQHLLYVLHELASFTGDANYRLAAHGLRALTHHLSS-PGSLSASAGVTNFASANHKFFRDSLINFNDISPWFRIPNNIANS 281 699**************************************************9.445555566666666677777777777***************** PP GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakrl 186 +l+ + ++ +++Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T++ + ++ ++L +fA+++++++++n l l CA03g07840 282 SVLQIIGEQdqlKKLHILDIGVSHGVQWPTLLEELTRRSgGPPPLVRLTVITPTIENgelrgtpfvIGPPGYDFSSQLLSFAKAININLQINRLDNFPL 380 ******999777888************************55666********9766678888888877888999*******************8777** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhns.esFlerflealeyysalfdsleaklpreseer 282 ++l+ + ++ +++E+l+++ +++lh+l ++ ++er+e+Lk++ksl Pk +v++e++ +++ns ++F++ f++ +ey + ++ds+++ + + r CA03g07840 381 QNLNSQVINSSSDETLVICAQFRLHNLN---HANPDERTELLKILKSLDPKGLVLSENNteCSCNScGDFATTFSRRVEYLWRFLDSTSVAY----KGR 472 ***************************8...77777889******************983355555269*******************8885....667 PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + Er+++++e+ +++++ g+ +e++ekW er++++GF + ++e++ + a++llrk++ ++++rvee++g++ l Wk++p+ ++S W+ CA03g07840 473 ESEERRMMEEEAAKALTNTGEL----NERKEKWCERMRSVGFVKDVFGEDVIDGARALLRKYDsNWEMRVEEKDGCVDLWWKGQPISFCSLWK 561 7777777777799999999998....88888********************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.74 | 157 | 540 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-71 | 184 | 561 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MFKHQNILST HSSTRFCDTM AIDESEPNSN FDSISEWLAS TLSDIPSFLD EPYSYIDDLN 60 FYGDSLWVTD QDDHIVNHNI ILDNTCNSFN NSSPVNTSTS NIPSEPIILN HPQPLDLSKK 120 RKTSSSDHNP KASRKNQNRQ MNEAEDAHAV VEPGVQLRRS TGPKRVTTKS TGNNSSNKEG 180 RWAEHLLNPC AAAITVGNMN HVQHLLYVLH ELASFTGDAN YRLAAHGLRA LTHHLSSPGS 240 LSASAGVTNF ASANHKFFRD SLINFNDISP WFRIPNNIAN SSVLQIIGEQ DQLKKLHILD 300 IGVSHGVQWP TLLEELTRRS GGPPPLVRLT VITPTIENGE LRGTPFVIGP PGYDFSSQLL 360 SFAKAININL QINRLDNFPL QNLNSQVINS SSDETLVICA QFRLHNLNHA NPDERTELLK 420 ILKSLDPKGL VLSENNTECS CNSCGDFATT FSRRVEYLWR FLDSTSVAYK GRESEERRMM 480 EEEAAKALTN TGELNERKEK WCERMRSVGF VKDVFGEDVI DGARALLRKY DSNWEMRVEE 540 KDGCVDLWWK GQPISFCSLW KM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 4e-32 | 180 | 561 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-32 | 180 | 561 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-32 | 180 | 561 | 30 | 419 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562454.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A1U8G393 | 0.0 | A0A1U8G393_CAPAN; nodulation-signaling pathway 1 protein-like | ||||
STRING | PGSC0003DMT400089692 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-145 | GRAS family protein |
Publications ? help Back to Top | |||
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