PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g03520

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 408aa MW: 44286 Da PI: 7.6014

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g03520	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.6e-05	295	333	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq CA03g03520 295 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 333 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.344	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.87E-5	293	337	No hit	No description
SuperFamily	SSF47459	8.51E-11	293	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-9	297	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MEPANLHHHQ QHQQYHHQLQ FQDQFPLIGI SPNSSSSSNN SCYGVSTTTH TWIPCTTTIL 60 NSPGSGLIDS YSSGAIINTT NSSSSDPLNL VSMSSTTQDL GFHQWDDNIK QESSLDNSYP 120 RFTQMLKSPS SIEEARELSD MNAKLLLGTL SNSGLQLYHG DNNNNNLLYS SNSSSVATNR 180 GRFSQIYPTI NVSNLNMYQA NSCSSLDMNL QPLDLINSSR YGGSFSQTYG LTNPFQHSSS 240 ESPVNSSTST ISAFSNGMPE AKRTSNTLEP NKGPQNAPKK SRVDSRTSCP PFKVRKEKLG 300 DRIAALQQLV APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRGK TNRSLHGGGG 360 EMNNGSSEEI KRDLRSRGLC LVPLSCLTYV TDGGGGIWPP PNFTGGT*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MEPANLHHHQ QHQQYHHQLQ FQDQFPLIGI SPNSSSSSNN SCYGVSTTTH TWIPCTTTIL  60
NSPGSGLIDS YSSGAIINTT NSSSSDPLNL VSMSSTTQDL GFHQWDDNIK QESSLDNSYP  120
RFTQMLKSPS SIEEARELSD MNAKLLLGTL SNSGLQLYHG DNNNNNLLYS SNSSSVATNR  180
GRFSQIYPTI NVSNLNMYQA NSCSSLDMNL QPLDLINSSR YGGSFSQTYG LTNPFQHSSS  240
ESPVNSSTST ISAFSNGMPE AKRTSNTLEP NKGPQNAPKK SRVDSRTSCP PFKVRKEKLG  300
DRIAALQQLV APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRGK TNRSLHGGGG  360
EMNNGSSEEI KRDLRSRGLC LVPLSCLTYV TDGGGGIWPP PNFTGGT*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-168	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016568517.1	0.0	PREDICTED: transcription factor bHLH110
Swissprot	Q9SFZ3	2e-61	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A2G2ZT93	0.0	A0A2G2ZT93_CAPAN; Transcription factor
STRING	PGSC0003DMT400009603	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-59	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]