PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g01170

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

G2-like

Protein Properties

Length: 294aa MW: 32657.4 Da PI: 6.9976

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g01170	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.2	2.1e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYR+ CA03g01170 45 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRM 99 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.487	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-33	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-17	44	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-24	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	7.3E-9	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-26	144	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MYSTLPIRSL GIEESGDFFN LQGCLSVDGT NLPGDSCVVL STDPKPRLRW TTELHERFVD 60 AVTQLGGPDK ATPKTIMRTM GVKGLTLYHL KSHLQKYRMG KQSAKEGTEN SKDGNEELLI 120 KYYSFPQIAL ISSVLLNLFN RGLQVTEALR VQMEVQRRLH EQLEVQRRLQ FRIEAQGKYL 180 QSILEKACKA FNSQSLESNG LEMNGEDLPA LATKVANDCE GIITVPSLPE IGSSIENRNA 240 CHLPARLGDC MLDDCLPSNG IGALKKRPRA FTNANGLPME SNTREVEWMM SNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	5e-63	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	5e-63	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016566382.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q94A57	2e-95	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1U8G4T8	0.0	A0A1U8G4T8_CAPAN; Myb family transcription factor APL
TrEMBL	A0A2G2ZTQ1	0.0	A0A2G2ZTQ1_CAPAN; myb family transcription factor APL-like
TrEMBL	A0A2G3CRI6	0.0	A0A2G3CRI6_CAPCH; Myb family transcription factor APL
STRING	XP_009619230.1	1e-163	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-98	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]