PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g01110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 29052.6 Da PI: 9.7139 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.4e-19 | 91 | 139 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g CA03g01110 91 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYLLRG 139 8******9.**********955...5**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.25E-32 | 89 | 148 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 90 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.313 | 90 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 90 | 148 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-36 | 90 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-11 | 91 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-12 | 91 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-11 | 113 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
SSPEMLFPMS SSLGHEGQIH YQEAPTPNST TSWLKMNQTL TNCTSTKGFS DYWLSTTKTQ 60 PMKFTGSSRK SSYIQKSSSS SSVSASQGKL FRGVRQRHWG KWVAEIRLPR NRTRVWLGTF 120 DTAEEAAFAY DTAAYLLRGD YAHLNFPHMK NQLKANSING STASLLEAKI RAISAQSKKT 180 DNNNIIDRDD IIISPKGLSN ENSTIKSAIT QNQESEKSME INNKVVKNIN QENIDGVQLS 240 RMPSLDMDMI WDALLISDSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 86 | 157 | 1 | 68 | ATERF1 |
3gcc_A | 3e-21 | 86 | 157 | 1 | 68 | ATERF1 |
5wx9_A | 7e-21 | 79 | 151 | 4 | 76 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 1e-158 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552708.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062 | ||||
Swissprot | Q9SVQ0 | 3e-66 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A1U8EZT4 | 0.0 | A0A1U8EZT4_CAPAN; ethylene-responsive transcription factor ERF062 | ||||
STRING | PGSC0003DMT400080372 | 1e-143 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 6e-51 | ERF family protein |