PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g29990
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 471aa    MW: 53733.3 Da    PI: 5.0358
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g29990genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.66.5e-105984683374
        GRAS   3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +lL++cA+a+++ d   +a++lL+++++++sp gd +qRla+yf+ AL+arla+ ++ +yk ++ ++ts    ++ l+a+ l+   +P+ ++ + +   
  CA02g29990  98 SLLISCAQAIAAADDCpNATELLKQIRQRSSPFGDGNQRLAHYFADALEARLAGIGNDIYKVISNRKTS---AADFLKAYDLYLASCPFRRIPNYVSSM 193
                 79********9965555***********************************************99999...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +I+  +++++r+HiiDf+i +G+QWpaL+q +a +++gpp+lRiTg++ p++g   +e++eetg+rLa +Ae++++ fe+++ +ak++e++ le+L ++
  CA02g29990 194 TIMSKADNATRIHIIDFGILYGFQWPALIQRIAFKEAGPPKLRITGIELPQPGfrPAERIEETGRRLAIYAERFNILFEYQA-IAKKWETILLEDLMLD 291
                 ****************************************************9*****************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +++ l+Vn+ ++ ++l+de+   es ++ vL+l+++++P+++++   +  ++++sF++rf e l+y+salfd+l + +pre  er  +Er ++gre+ n
  CA02g29990 292 KNDFLVVNCLYRCKNLPDETELEESSKTIVLNLIRKINPDIFIHGIVNGAYSAPSFVTRFHEVLSYFSALFDMLGTVVPREIPERLLIERDIFGREALN 390
                 *********************9999************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v+aceg er+er et+++W+ r  +a F+++p++ +++k     +r  + + + ++ee+++l+lgWk+r ++++S+W+
  CA02g29990 391 VIACEGLERVERPETYKQWQVRNLRAMFTQIPFEREIMKRSIEAVRSSYHKDFVIDEEDQWLLLGWKGRVIYALSCWT 468
                 *****************************************99999999888*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.22870448IPR005202Transcription factor GRAS
PfamPF035142.2E-10298468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDPKFNTSVN EFHPEDQSIS SSSDLLKSNE PRCDSSRPEN SELEAVYTES TVCSEEFDRV  60
LLLGTGKKWD ELAAYRESMK NGASMETSKN DDVVDLPSLL ISCAQAIAAA DDCPNATELL  120
KQIRQRSSPF GDGNQRLAHY FADALEARLA GIGNDIYKVI SNRKTSAADF LKAYDLYLAS  180
CPFRRIPNYV SSMTIMSKAD NATRIHIIDF GILYGFQWPA LIQRIAFKEA GPPKLRITGI  240
ELPQPGFRPA ERIEETGRRL AIYAERFNIL FEYQAIAKKW ETILLEDLML DKNDFLVVNC  300
LYRCKNLPDE TELEESSKTI VLNLIRKINP DIFIHGIVNG AYSAPSFVTR FHEVLSYFSA  360
LFDMLGTVVP REIPERLLIE RDIFGREALN VIACEGLERV ERPETYKQWQ VRNLRAMFTQ  420
IPFEREIMKR SIEAVRSSYH KDFVIDEEDQ WLLLGWKGRV IYALSCWTPT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4410346926380Protein SCARECROW
5b3h_A4e-4410346925379Protein SCARECROW
5b3h_D4e-4410346925379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561604.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809331e-172SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1U8G0V30.0A0A1U8G0V3_CAPAN; Scarecrow-like protein 9
TrEMBLA0A2G3ACP80.0A0A2G3ACP8_CAPAN; scarecrow-like protein 9
STRINGXP_009622916.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-174GRAS family protein