PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g28390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 29492.7 Da PI: 5.917 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 50 | 103 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k CA02g28390 50 KKRRLNMEQVKALERSFEMANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 103 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.8 | 1.3e-42 | 49 | 139 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe+ +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+yd+lk++n++L+++++eL++el CA02g28390 49 EKKRRLNMEQVKALERSFEMANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRHYDSLKADNDALKAQNKELHSEL 139 69**************************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-19 | 46 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.1E-18 | 48 | 109 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.649 | 49 | 105 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-15 | 50 | 103 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.74E-17 | 50 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-19 | 52 | 112 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 76 | 85 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 80 | 103 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 85 | 101 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.1E-15 | 105 | 145 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MNIYAGLPSM LMRRSMSFSG AERCDNHQDL RVDDNEMSDD DGSSQLLGEK KRRLNMEQVK 60 ALERSFEMAN KLEPERKIQL ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YEILKRHYDS 120 LKADNDALKA QNKELHSELL NVKNRESSGG GGTPIMINLN KENEGSWSNN GSDDNNSIDV 180 NLGTATTSGD SPFYSKNVFP ETGPTTLAHF LQSSSRPDLS HCHKIDPTVQ DDQGFCNMFT 240 PVDDQTNFWP WPEQQHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 105 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019267026.1 | 1e-148 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
TrEMBL | A0A2G3D9M8 | 0.0 | A0A2G3D9M8_CAPCH; Uncharacterized protein | ||||
STRING | XP_009783877.1 | 1e-144 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 4e-62 | HD-ZIP family protein |