PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g28250

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 306aa MW: 34400.4 Da PI: 7.3365

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g28250	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.4e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g+WT+eEd lv v+++G+g+W+t++ + ++R+ k+c++rw +yl CA02g28250 14 KGPWTPEEDIMLVSFVQEHGPGNWRTVPTHTAgLRRCSKSCRLRWTNYL 62 79**************************999************97 PP
2	Myb_DNA-binding	48.7	1.7e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l CA02g28250 68 RGSFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 113 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-24	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.96	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.32E-30	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-14	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-15	14	62	IPR001005	SANT/Myb domain
CDD	cd00167	4.29E-11	16	62	No hit	No description
PROSITE profile	PS51294	24.584	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-25	66	118	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-16	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	9.8E-15	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	2.01E-10	70	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGRPPCCDKL GVKKGPWTPE EDIMLVSFVQ EHGPGNWRTV PTHTAGLRRC SKSCRLRWTN 60 YLRPGIKRGS FTDQEEKMII QLQALLGNKW AAIASYLPER TDNDIKNYWN THLKKKLKKL 120 EANDLYSSDG HCLSSIKSAS RGQWERTLQA DINTAKQALQ NALSLDKSSP ISEYTIKPIN 180 IDCYPSYIKQ EAKMSTSTYA SSAENIAKLL KQWTRSDSTN NSEQSKASSS TQFSCNTTNN 240 TNAMTEYSSS FESFEPSNSD QFSQATTPEA AGKFYGESKR ELDNEVPLSV MLESWLFDEN 300 DDLLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	5e-30	14	117	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-29	14	117	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-29	14	117	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	5e-30	14	117	4	105	C-Myb DNA-Binding Domain
1msf_C	5e-30	14	117	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562275.1	0.0	PREDICTED: myb-related protein 306-like
Swissprot	P81392	1e-103	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A2G3ACC6	0.0	A0A2G3ACC6_CAPAN; Myb-related protein
STRING	Solyc02g087960.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-100	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]