PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g28150

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 373aa MW: 40471.4 Da PI: 7.8337

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g28150	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	102.1	3.4e-32	1	48	14	61
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s CA02g28150 1 METKFCYFNNYNTSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKNS 48 68******************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-19	1	46	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-25	1	47	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	23.85	1	47	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
METKFCYFNN YNTSQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKHKNSVL HDSYSSVSEA 60 LSKARTNFPN ETQQPPLTIS GTILTFDTDK PLSESMVSAL NVSDKTMQNY SGNGFRKYKE 120 LGIQAGDKGD DLSDGSSVTV VSSKDSDNGL PDTLRQNCNS FSNHLPCFSG APWPYIWSSV 180 PCRNVVPPPG YYSLPGIPVS LFPATTYSGC TILGSWNVPK MPPPTASQNQ VPLTSGPNSP 240 TFGKHSRDEN VLNSMGTEEE PRKESNPGRR IWFPKTSRIG DLGEAAKSSI WGTLGIKHEV 300 VDSVGGGLLK AFLPRSDERN CVSETSTLLQ VNPAAISREL GGVEGRDCCG TYHVASASEL 360 LLCYEALAHV LC*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

METKFCYFNN YNTSQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKHKNSVL HDSYSSVSEA  60
LSKARTNFPN ETQQPPLTIS GTILTFDTDK PLSESMVSAL NVSDKTMQNY SGNGFRKYKE  120
LGIQAGDKGD DLSDGSSVTV VSSKDSDNGL PDTLRQNCNS FSNHLPCFSG APWPYIWSSV  180
PCRNVVPPPG YYSLPGIPVS LFPATTYSGC TILGSWNVPK MPPPTASQNQ VPLTSGPNSP  240
TFGKHSRDEN VLNSMGTEEE PRKESNPGRR IWFPKTSRIG DLGEAAKSSI WGTLGIKHEV  300
VDSVGGGLLK AFLPRSDERN CVSETSTLLQ VNPAAISREL GGVEGRDCCG TYHVASASEL  360
LLCYEALAHV LC*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016561394.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A2G3ACC2	0.0	A0A2G3ACC2_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400003359	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-60	cycling DOF factor 2