PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g28070

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 327aa MW: 37304.1 Da PI: 7.7445

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g28070	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.8	8.2e-57	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL++kv ++++ + ++i evd++kvePwdLp ++k +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkd+e+++ +++l CA02g28070 16 LPPGFRFHPTDEELITHYLAPKVLDSSFCA-RAIGEVDLNKVEPWDLPWRAKMGEKEWYFFCIRDKKYPTGQRTNRATEAGYWKATGKDREIFK-SKTL 112 79***********************998.89***********888999*************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykgrap+gekt+Wvmheyrl CA02g28070 113 VGMKKTLVFYKGRAPRGEKTNWVMHEYRL 141 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.027	16	166	IPR003441	NAC domain
Pfam	PF02365	5.4E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
METMCGFGGQ EEEMELPPGF RFHPTDEELI THYLAPKVLD SSFCARAIGE VDLNKVEPWD 60 LPWRAKMGEK EWYFFCIRDK KYPTGQRTNR ATEAGYWKAT GKDREIFKSK TLVGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR LDGKYSVHNL PKTAKNECVI CRIFKKSSGG KKIPISNLIR 180 SNNMTDNLRS SNLPPLTNMS PYNNNIKITT TARSSGETCN SHVTCFSDSV EDQKPQTHHH 240 HPQPLSCSPV SVEFPKDPSN VPNQSMSYID NFQYADSGLM QDNSIMRLLL DNNYGSESKQ 300 NLRGYEDHDF NITSTGPVDI DCLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-53	13	172	17	174	NAC domain-containing protein 19
3swm_B	6e-53	13	172	17	174	NAC domain-containing protein 19
3swm_C	6e-53	13	172	17	174	NAC domain-containing protein 19
3swm_D	6e-53	13	172	17	174	NAC domain-containing protein 19
3swp_A	6e-53	13	172	17	174	NAC domain-containing protein 19
3swp_B	6e-53	13	172	17	174	NAC domain-containing protein 19
3swp_C	6e-53	13	172	17	174	NAC domain-containing protein 19
3swp_D	6e-53	13	172	17	174	NAC domain-containing protein 19
4dul_A	6e-53	13	172	14	171	NAC domain-containing protein 19
4dul_B	6e-53	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016561385.1	0.0	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FLJ2	1e-125	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U8FRK3	0.0	A0A1U8FRK3_CAPAN; NAC domain-containing protein 92
STRING	PGSC0003DMT400003380	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-120	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]