PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g27940
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 421aa    MW: 47233.2 Da    PI: 4.3369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g27940genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-194796255
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  CA02g27940 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96
                789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.18E-3246103No hitNo description
Gene3DG3DSA:3.30.730.102.3E-2747103IPR001471AP2/ERF domain
PROSITE profilePS5103219.55947104IPR001471AP2/ERF domain
SMARTSM003808.9E-3647110IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-1947104IPR016177DNA-binding domain
PfamPF008471.1E-134796IPR001471AP2/ERF domain
PRINTSPR003676.3E-84859IPR001471AP2/ERF domain
PRINTSPR003676.3E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MARKRRASEA LGEKTRDDHQ GNVAWDEMVK EAAAATALGG ARRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSPSS STTPALPSKI  120
TNLLISRLKA RNNSLAAAAA TASSSSDSSV PVAENHDQDK QGEEFREEEE AYFSDFQYME  180
YLKEPEDLIT DNNMIGNMSA INVTSFTNTL EECLTENDYT VIQPVKIHEN SIGVEMNNTV  240
ELDGEEEIED ENNTDIGDIV EPIDFQFVDE IGSSCYYSPF EIADEINSSE TMEQGMIYGD  300
ESSMLTEAMR RMNYERKFSA SLYAFNGITE CLKLKLKSGG VMQRERSEQL SRLRNACKRN  360
RNEEEEKKIH EGEINEKKDT EYISESSASS SSTITEETNY DSELLLWSSI DLPPICAFVT  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12471031471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154770.0AC215477.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0042B19, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562270.10.0PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A1U8FTV90.0A0A1U8FTV9_CAPAN; Ethylene-responsive transcription factor 7
TrEMBLA0A2G3ACE10.0A0A2G3ACE1_CAPAN; ethylene-responsive transcription factor 1-like
STRINGPGSC0003DMT4000034030.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11