PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g27290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | TCP | ||||||||
Protein Properties | Length: 295aa MW: 33051.4 Da PI: 7.1198 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.3 | 3.4e-31 | 54 | 190 | 2 | 94 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssaseceaes 77 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ + + + CA02g27290 54 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLqippgnlnpnlypmlgiggnsqiN---------RE 143 689*************************************************************666655555555555443322210.........22 PP TCP 78 ssssasnsssg..............................kaaksa 94 + ++snss++ ++++++ CA02g27290 144 GHHNKSNSSINwdnvplepsnnnplgynpnilkwdpsnlslAHSENS 190 22222222222444445555555667777777776655554233333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.554 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.5E-28 | 56 | 131 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MISREVNKQE SNPNDDGNTS NQNNNNKASS STSNSTTSWT RLKDPRIVRV SRAFGGKDRH 60 SKVCTVRGLR DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLDAAKHE IDELPPLQIP 120 PGNLNPNLYP MLGIGGNSQI NREGHHNKSN SSINWDNVPL EPSNNNPLGY NPNILKWDPS 180 NLSLAHSENS VPHHQHDHQD IHNFNLMPSM PLGSHHQLVV YPPGLPQFFH QHNIAGASSS 240 DQFDPKEINF QMLNNSGSEN PTNSFRHPID STSQSIRPFH FLPSQNCEER ESSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-128 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562255.1 | 0.0 | PREDICTED: transcription factor TCP13 | ||||
Refseq | XP_016562256.1 | 0.0 | PREDICTED: transcription factor TCP13 | ||||
TrEMBL | A0A1U8FTU4 | 0.0 | A0A1U8FTU4_CAPAN; Transcription factor TCP17 | ||||
TrEMBL | A0A2G3ABR2 | 0.0 | A0A2G3ABR2_CAPAN; transcription factor TCP13 | ||||
STRING | PGSC0003DMT400003453 | 1e-151 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-46 | plastid transcription factor 1 |