PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g26690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CO-like
Protein Properties Length: 389aa    MW: 43270.1 Da    PI: 5.0323
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g26690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.5e-084287342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 ++C+ +e  ++ + C+ +   lC++C   +H+       H +vp+
  CA02g26690 42 VWVCEACECAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 87
                689*****************************66899999877775 PP
2CCT691.2e-23320363144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++lRYkeK+k+RkFeK+irY+sRK++Ae+RpR+KGrF++++
  CA02g26690 320 REARVLRYKEKKKNRKFEKTIRYASRKVYAETRPRIKGRFARRT 363
                 9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.812144IPR000315B-box-type zinc finger
SMARTSM003360.011144IPR000315B-box-type zinc finger
CDDcd000216.42E-7144No hitNo description
PROSITE profilePS5011910.8794087IPR000315B-box-type zinc finger
PfamPF006439.1E-74187IPR000315B-box-type zinc finger
CDDcd000211.18E-74387No hitNo description
SMARTSM003364.4E-74587IPR000315B-box-type zinc finger
PfamPF062032.6E-17320362IPR010402CCT domain
PROSITE profilePS5101716.42320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MCDSCHFAAC TVYCQADSAY LCVGCDARIH AAGLEASRHE RVWVCEACEC APAAFLCKAD  60
AASLCASCDA DIHSANPLAR RHHRVPIMPI PGTLYGPPAV DIVGDDSMII GEPRGDSTEN  120
YGFLRLTKDE DDMTIDEEDE DEAASWLLLN PPVTNNNKNN VNNNINNQNN NCRMLFGGEV  180
VDDYLDLAEY GGDNQFNDQY SVNQQQQLYS VPQKSYGGDS VVPVQDGQGK SLIIYHQQQQ  240
QQSHHLNFQL GVEYDNSNTG YGYPASMSHS VSISSMDVSV VPESALSENS NSHPRPPKES  300
IDLYSGHPIQ IPPHLAQMDR EARVLRYKEK KKNRKFEKTI RYASRKVYAE TRPRIKGRFA  360
RRTDIEAEVY QMLSTQLMTD SSYGIVPS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM8883890.0AM888389.1 Solanum tuberosum subsp. andigena mRNA for CONSTANS protein (CO gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561207.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-118COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A1U8FPR00.0A0A1U8FPR0_CAPAN; zinc finger protein CONSTANS-LIKE 2-like
STRINGPGSC0003DMT4000260650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-78CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]