PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g26680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | CO-like | ||||||||
Protein Properties | Length: 393aa MW: 43304 Da PI: 5.3636 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.5 | 9.8e-07 | 1 | 41 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++ + +C ++ +lC C +H H++ CA02g26680 1 MCDSCHSAASTVYCWADSAYLCTGCDAGIHAAslvasrHKR 41 5******99*********************66777777876 PP | |||||||
2 | CCT | 67.5 | 3.7e-23 | 323 | 366 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++ RY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ CA02g26680 323 REARVIRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 366 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.755 | 1 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.5E-4 | 1 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.70E-7 | 1 | 44 | No hit | No description |
CDD | cd00021 | 0.00225 | 43 | 87 | No hit | No description |
PROSITE profile | PS51017 | 16.599 | 323 | 365 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.7E-17 | 323 | 365 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MCDSCHSAAS TVYCWADSAY LCTGCDAGIH AASLVASRHK RVWVCEALEH APAAFLCKAD 60 AASFCASCDA DIQSANPLAH LHHCVPIMPI PGTLSGPPAV DTVGGGSMMI GGTTGECTED 120 DGFLSLTQDA DDTMIDEEDE DEAPSWLLLN LPVKNNNKNN VSNTNNNQNN NYGMLFGGEV 180 VDDYLDLAEY GGDCQFNDQY SVNQQQQHYS APPKSYGGDS VVPVQDGQRK SLILYHQQQQ 240 QQQQQSHHLN FQLGTEYDRF NTGYGYPASL SHSVSNSSVD VSVVPESALS ETSNSHPRVP 300 KKTIDHYSGP PIQIPPQLTP MDREARVIRY REKKKNRKFE KTIRYASRKA YAETRPRIKG 360 RFAKRTDVEA EVDQMFSTQL MTDSSYRIVP SF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM888389 | 0.0 | AM888389.1 Solanum tuberosum subsp. andigena mRNA for CONSTANS protein (CO gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561208.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2-like | ||||
Swissprot | Q96502 | 1e-113 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A2G3ABR1 | 0.0 | A0A2G3ABR1_CAPAN; Zinc finger protein CONSTANS-LIKE 2 | ||||
STRING | PGSC0003DMT400026065 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5248 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 2e-49 | CONSTANS-like 2 |
Publications ? help Back to Top | |||
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