PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g26670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CO-like
Protein Properties Length: 405aa    MW: 44556.4 Da    PI: 5.422
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g26670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.7e-061959438
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                r+C+ +++   + +C+ ++ +lC+ C   +H        H+
  CA02g26670 19 RVCDSCHSAACTVYCRADSAYLCAGCDARIHAAsvvasrHE 59
                79******99*********************6566666666 PP
2zf-B_box28.92.3e-0961106342
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  ++C+ +e+ ++ + C+ +   lC++C   +H+       H +vp+
  CA02g26670  61 VWVCEACERAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 106
                 689*****************************66899999877775 PP
3CCT68.41.9e-23335378144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Re ++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  CA02g26670 335 RETRVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 378
                 99****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8121663IPR000315B-box-type zinc finger
SMARTSM003361.7E-61663IPR000315B-box-type zinc finger
CDDcd000211.49E-81963No hitNo description
PROSITE profilePS5011911.12159106IPR000315B-box-type zinc finger
PfamPF006432.7E-760106IPR000315B-box-type zinc finger
CDDcd000211.73E-962106No hitNo description
SMARTSM003363.7E-964106IPR000315B-box-type zinc finger
PfamPF062032.0E-17335377IPR010402CCT domain
PROSITE profilePS5101716.44335377IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MLKKENSGGF DGSSNNWARV CDSCHSAACT VYCRADSAYL CAGCDARIHA ASVVASRHER  60
VWVCEACERA PAAFLCKADA ASLCASCDAD IHSANPLARR HHRVPIMPIP GTLYGPPAVD  120
TVGGGSMMIG GTTGEGTEDD GFLSLTQDAD DTTIDEEDED EAASWLLLNP PVKNNNKNNN  180
ENNYGMLFGE EVVDDYLDLA EYGGDNQFND KYSVNQQQLH YSVPQKSYGG DSVVPVQDGQ  240
RKSLILYHQQ QQQQQQKSHH LNFQLGMEYD NSNTGYGYPA SLSHSVSISS MDVSVVPESA  300
LSETSNSHPR PPKGTIDLFS GTPIQVPPQL TPTDRETRVL RYREKKKNRK FEKTIRYASR  360
KAYAETRPRI KGRFAKRTDV EAEVDQMFST QLMADTSYGI VPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4902510.0AY490251.1 Lycopersicon esculentum CONSTANS 1 (CO1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561206.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-132COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A1U8FPQ40.0A0A1U8FPQ4_CAPAN; zinc finger protein CONSTANS-LIKE 2-like
TrEMBLA0A2G3ABV80.0A0A2G3ABV8_CAPAN; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2G3ATM30.0A0A2G3ATM3_CAPCH; Zinc finger protein CONSTANS-LIKE 2
STRINGPGSC0003DMT4000260650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-95CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]