PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g26350
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 282aa    MW: 31495.8 Da    PI: 10.4365
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g26350genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.65.3e-39842052133
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100
                 a+kkdrhski T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WL++++k a+ el + + s+  +  +++s+  ++             +  +
  CA02g26350  84 AVKKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLGFDKPSKTLDWLFTKSKLAMEELIDAKKSATPSP-TNNSECDED-------IV--VVPAAP 172
                 89*************************************************************944444222.111111111.......11..123333 PP

         TCP 101 qksaasalnlakesrakarararertrekmrik 133
                  ++ ++  +l +esrakarararert +k  ++
  CA02g26350 173 ADELTKRAKLERESRAKARARARERTMKKIWTQ 205
                 344444568999***************997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3385153IPR005333Transcription factor, TCP
PROSITE profilePS5136933.71486144IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.514184201IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MFPFGNSSNG NPTLHSSVPP SSFHSSNSSI FGLNGNQMLF HQHDLDHHLP YLPSNGHLID  60
NNSPVMFATN NVISSNKSNK NKKAVKKDRH SKILTSQGHR DRRVRLSIGV ARKFFDLQDM  120
LGFDKPSKTL DWLFTKSKLA MEELIDAKKS ATPSPTNNSE CDEDIVVVPA APADELTKRA  180
KLERESRAKA RARARERTMK KIWTQIEAKS VLVKEQTKME QIMNLSGPNR EAATSRYNNC  240
TRNWDHDNVN PTIMSSMAAA TICCTSSSQG KIKLLTKVQQ F*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153849e-71AC215384.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0108N03, complete sequence.
GenBankGQ4963259e-71GQ496325.1 Solanum lycopersicum TCP transcription factor 7 (TCP7) mRNA, complete cds.
GenBankHG9754419e-71HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755149e-71HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
GenBankHM9210689e-71HM921068.1 Solanum lycopersicum CYCLOIDEA1 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555980.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1U8FJP50.0A0A1U8FJP5_CAPAN; Uncharacterized protein
TrEMBLA0A2G3ABT40.0A0A2G3ABT4_CAPAN; transcription factor CYCLOIDEA-like
STRINGXP_009793865.13e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-26TCP family protein