PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g25280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 529aa MW: 60034.9 Da PI: 6.23 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 344.5 | 1.8e-105 | 147 | 527 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + Lle A+a+++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ + + f+evsP+ +f+h++ N a CA02g25280 147 DILLETARAIADKNSTRVQQLMWMLNELSSPYGDTEQKLASYFLQALFSRMTDSGERCYRTLLSASDKTCSFESTRKLVLKFQEVSPWTTFGHVASNGA 245 689**********************************************************97777775554444455555****************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvak.rledlelee 193 I+ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v+s++s ++ ++e+g+r++kfA+ +gvpf+fnv+++ +l++l++ + CA02g25280 246 IMEALEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVSASSAtggassVQKVMKEIGSRMEKFARLMGVPFKFNVIHHMgNLSELDIGA 344 ************************************************98889999988999***********************96656********* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvEre 288 L++k++Eala+n++ +lh++ + ++rd +++l+++l+P++v++ve+ead++ + +F+++f e+l++ + f+sl+++++++s+er ++Er+ CA02g25280 345 LDIKEDEALAINCIGALHSVT----PAGNRRDYLISLFRRLQPRIVTIVEEEADLDVGvdgfDFVKGFQECLKWIRVYFESLDESFSKTSNERLMLERQ 439 ********************8....778889*********************99865556669************************************ PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....eesgslvlgWkdrpLvsvSaWr 374 gr+iv+++ac +e+ er+et kW++r++ GF pv++s+++ +++++llr++k +g+++ + + ++l Wk++p+v++SaW+ CA02g25280 440 -AGRSIVDLLACPPSESMERRETGVKWSNRMHGGGFIPVSYSDEVCDDVRALLRRYK-EGWSMGqcggGDAAGIFLSWKEQPVVWASAWK 527 .********************************************************.88888844445588889**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.596 | 119 | 504 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-103 | 147 | 527 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0045930 | Biological Process | negative regulation of mitotic cell cycle | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MDTLFRLVTL QQQQQQQQIQ QQQSDQYSFN SSRTSSSSRS SNKQNTYNIY NYHPHHQDHQ 60 DEECFNFFMD EDDFSSSSSK HTNYPSHHYT HYQQQQQQIS NTPTPTTTSS TPTQQSHHHH 120 HYDHQFSPAR DLNLEFASSF SGKWATDILL ETARAIADKN STRVQQLMWM LNELSSPYGD 180 TEQKLASYFL QALFSRMTDS GERCYRTLLS ASDKTCSFES TRKLVLKFQE VSPWTTFGHV 240 ASNGAIMEAL EGESKLHIID ISNTYCTQWP TLLEALATRT DETPHLRLTT VVSASSATGG 300 ASSVQKVMKE IGSRMEKFAR LMGVPFKFNV IHHMGNLSEL DIGALDIKED EALAINCIGA 360 LHSVTPAGNR RDYLISLFRR LQPRIVTIVE EEADLDVGVD GFDFVKGFQE CLKWIRVYFE 420 SLDESFSKTS NERLMLERQA GRSIVDLLAC PPSESMERRE TGVKWSNRMH GGGFIPVSYS 480 DEVCDDVRAL LRRYKEGWSM GQCGGGDAAG IFLSWKEQPV VWASAWKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 0.0 | 112 | 528 | 2 | 420 | Protein SHORT-ROOT |
5b3h_E | 0.0 | 112 | 528 | 2 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016560946.1 | 0.0 | PREDICTED: protein SHORT-ROOT | ||||
Swissprot | Q9SZF7 | 0.0 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A1U8FNZ0 | 0.0 | A0A1U8FNZ0_CAPAN; Protein SHORT-ROOT 1 | ||||
TrEMBL | A0A2G3AB65 | 0.0 | A0A2G3AB65_CAPAN; protein SHORT-ROOT | ||||
STRING | Solyc02g092370.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2031 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 0.0 | GRAS family protein |