PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g25090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 452aa    MW: 50981.3 Da    PI: 5.7711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g25090genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.23.8e-94594482373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaN 99 
                 ++lL++cA+a++s+d +laq++L+ l+++a pdgd++qRl+  f++AL  r a+   +++k l+++ +++++ ++ ++  l  f++++P+++f++ +aN
  CA02g25090  59 EQLLVHCANAIESNDSTLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTANLNHSMEtHKFSIIELASFVDLTPWHRFGFTAAN 155
                 79****************************************************..666766666655544436666666677**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......vakrled 188
                  aIleaveg + +Hi+Df++++++Q p+L++a++sR egpp +++T+ g+ e        ++ee+g +L +fA++ +v +ef+v+            ++
  CA02g25090 156 GAILEAVEGYSIIHIVDFSLTHCMQIPTLIDAISSRLEGPPLVKLTVAGATEDLppmLDLSYEELGAKLVNFARSRNVMMEFRVIpssssdgF----SN 250
                 **************************************************776698888999**********************977633333....33 PP

        GRAS 189 leleeLrvkp......gEalaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                 + +e+Lrv++      gEal++n++++lh+++           ++ +++s r+ +Lk++++l P++vv+v+++ad +s++++ r+ +a++y +  +d++
  CA02g25090 251 V-IEQLRVQNlirpenGEALVINCHMMLHYIPeettllsnrfTSECTTNSFRTMFLKAIRNLDPTIVVLVDEDADFTSNNLVCRLRSAFNYLWIPYDTV 348
                 3.66666666666678****************88888888877777778899*********************************************** PP

        GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                 ++ lpr s++r+++E+  + ++i+nv+a+eg +r er e +++W +r+++a +++  +se+a++++k +l +++  g+ ++ e++ lvl+Wk++++v++
  CA02g25090 349 DTFLPRGSKQRQWYEAD-ICWKIENVIANEGVQRLERLEPKSQWVQRMRNANLRSSGFSEEAVMEVKNMLDEHA-AGWGLKREEEDLVLTWKGHNVVFA 445
                 *****************.********************************************************.8999******************** PP

        GRAS 371 SaW 373
                 +aW
  CA02g25090 446 TAW 448
                 *** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.97932430IPR005202Transcription factor GRAS
PfamPF035141.3E-9159448IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MMQFTESLPP SLHQQVSPFS NLMMNKNSST NNQIQRARPW PGFHTPKNLG NIGDTNCMEQ  60
LLVHCANAIE SNDSTLAQQI LWVLNNIAPP DGDSNQRLTC GFLRALIVRA AKIGTCKLLT  120
ANLNHSMETH KFSIIELASF VDLTPWHRFG FTAANGAILE AVEGYSIIHI VDFSLTHCMQ  180
IPTLIDAISS RLEGPPLVKL TVAGATEDLP PMLDLSYEEL GAKLVNFARS RNVMMEFRVI  240
PSSSSDGFSN VIEQLRVQNL IRPENGEALV INCHMMLHYI PEETTLLSNR FTSECTTNSF  300
RTMFLKAIRN LDPTIVVLVD EDADFTSNNL VCRLRSAFNY LWIPYDTVDT FLPRGSKQRQ  360
WYEADICWKI ENVIANEGVQ RLERLEPKSQ WVQRMRNANL RSSGFSEEAV MEVKNMLDEH  420
AAGWGLKREE EDLVLTWKGH NVVFATAWVP L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-474445073474Protein SHORT-ROOT
5b3h_B3e-474445019420Protein SHORT-ROOT
5b3h_E3e-474445019420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560964.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-179SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8FZ100.0A0A1U8FZ10_CAPAN; Scarecrow-like protein 32
TrEMBLA0A2G3AB420.0A0A2G3AB42_CAPAN; scarecrow-like protein 32
STRINGSolyc02g092570.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein