PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g24700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 37441.8 Da PI: 7.2328 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.9e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q+G+g +W t ++++g++R++k+c++rw++yl CA02g24700 14 RGPWSPEEDSKLKAYIEQHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ CA02g24700 69 GEFTDEEDNIICTLYMSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.976 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.05E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.98E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.842 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.27E-8 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDSKLKAYIE QHGTGGNWIT LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTDEEDNIIC TLYMSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLLC 120 NKQRKDHRPR TGYNHNKVDM MKEQEDFFAT HQTTNNAYSW SPQQILFSTL IAPQNHDLAE 180 CSANSHNFQY SSTDQAYFSQ DQLCQISSTN HLASMNPVNG STCNSSMMVS SGAYYPSNGV 240 CNNGLQEYNN YISVGLDHDV LNSTSTAHSQ QVDKSVLEMV NSSTISTTSQ DQSTSWEELS 300 PLVNYPPSVF ETVSPYYVFE EPRYLGLLKQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562190.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 9e-79 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A1U8FTP0 | 0.0 | A0A1U8FTP0_CAPAN; Transcription factor MYB39 | ||||
TrEMBL | A0A2G3AB33 | 0.0 | A0A2G3AB33_CAPAN; transcription factor RAX3-like | ||||
STRING | PGSC0003DMT400055148 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-80 | myb domain protein 84 |
Publications ? help Back to Top | |||
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