PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g24550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 20253.2 Da PI: 9.6913 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.2 | 3.9e-15 | 21 | 68 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+r+ + f +L +l+P + kKl+Ka+iL A++YIk+L+ CA02g24550 21 QDHVLAERKRRERLTQYFVTLSTLIPDL-----KKLDKASILGDAIKYIKQLE 68 56999***********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.891 | 18 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-13 | 21 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-18 | 22 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-18 | 23 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.25E-14 | 23 | 72 | No hit | No description |
SMART | SM00353 | 1.5E-16 | 24 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MGFGAGEAKK TSNSRTPLQA QDHVLAERKR RERLTQYFVT LSTLIPDLKK LDKASILGDA 60 IKYIKQLEEQ VKSLEEETKK YNEEPVAAVK RPRVLTSYDN STISNENSNK SVPNIEVRAN 120 SDGNVLIRIY CKKQARIVKE IFSQVEMLHL TITSSSVIPF GYNTTDITIV AQVLYNLTF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 31 | ERKRRE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 2e-42 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016562188.1 | 1e-121 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A1U8G0M3 | 1e-120 | A0A1U8G0M3_CAPAN; transcription factor bHLH18-like | ||||
STRING | PGSC0003DMT400078699 | 7e-89 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4508 | 14 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 7e-44 | bHLH family protein |