PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g22970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 25033.2 Da PI: 5.2617 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.8e-20 | 57 | 109 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k CA02g22970 57 KRKLSEEQVNLLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWK 109 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.7 | 7.7e-39 | 56 | 147 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE+sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + +++rLe+ev +L+e+l+e CA02g22970 56 RKRKLSEEQVNLLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDNNVVDKCRLETEVLKLKEQLSE 147 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.973 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-20 | 54 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.53E-17 | 56 | 112 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-18 | 57 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.1E-17 | 57 | 109 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 58 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.9E-6 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-6 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MNHHQVAEDE MVLINQYYPG IYTQLAPQQG ESKPRRRRKK NKLGEGSGSD QAMMMRKRKL 60 SEEQVNLLEQ SFGDEHKLES ERKDKLAAEL GLDPRQVAVW FQNRRARWKS KKLEEEYSKL 120 KSEHDNNVVD KCRLETEVLK LKEQLSEAEK EIQRLLFERC DGVSSNTSPS ASSFSMEAAM 180 EPPYLGEFGM EGMDDMFYGQ ENNYVQGLDW VNLYI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 58 | RKKNKLGEGSGSDQAMMMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226001 | 1e-104 | AC226001.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0116F10, complete sequence. | |||
GenBank | HG975514 | 1e-104 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016560578.1 | 1e-159 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-72 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | Q9ZU70 | 2e-72 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A1U8FVX0 | 1e-158 | A0A1U8FVX0_CAPAN; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A2G3AAF0 | 1e-158 | A0A2G3AAF0_CAPAN; homeobox-leucine zipper protein ATHB-40 | ||||
STRING | Solyc02g085630.2.1 | 1e-127 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 4e-63 | homeobox protein 40 |
Publications ? help Back to Top | |||
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