PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g22940
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 549aa    MW: 60696.8 Da    PI: 5.9537
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g22940genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3304.6e-1011835472374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs++sPi+ fs +taN
  CA02g22940 183 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------STRQTRPSSSSDVIQTIKSYKIFSNISPIPMFSSFTAN 275
                 678*************************999************************......778888999999************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 qa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++ fe+++ + +++e l+++++
  CA02g22940 276 QAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLTQFARELNIGFEIDFALIRTFELLSFKAI 372
                 **********************************877666689***********66..99999**********************99************ PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres..eerikvEre 288
                 ++ +gE++aV l+ +++r +          + +++ ++++sP+vvv+v++e  + +n+ sF + +++ le+ys+l++sl +a+++  +  ++++k+E+ 
  CA02g22940 373 KFMEGEKTAVLLSPAIFRRV------G---SGFVNDLRRISPNVVVHVDSEglMGYNAMSFRQTVIDGLEFYSTLLESLeAANIGGGNcgDWMRKIENY 462
                 ******************98......3...48*******************88888***********************88999999999********* PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +l ++iv++va+ g++        ++W++++  aGF+p+ ls++a  qa++ll +v+++g++v +++++++l+W+dr+Lv++SaWr
  CA02g22940 463 VLFPKIVDMVAAIGRR-GVGFGGGGSWKDAMVGAGFRPMGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWR 547
                 **************96.8888999*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.591156527IPR005202Transcription factor GRAS
PfamPF035141.6E-98183547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MKVPFSTNDN VSSKPLISNN NNNNNLRNVT FPAATNGPNL CYEPKSVLEL RRSPSPIVEK  60
QITTNPDLSA LCGSEDPLQL GDHVLSNFED WDSLMRELGL HDDSASLSKT NPQLSLTHSE  120
SLTHFHNLSD FSADSTQFAS PDFSFSESTF PQQFPAVNQG SFINALDLSG DIHQNWNVGF  180
DYVDELIRFA ECFETNAFQL AHVILARLNQ RLRSAAGKPL QRAAFYFKEA LQAQLAGSTR  240
QTRPSSSSDV IQTIKSYKIF SNISPIPMFS SFTANQAVLE AVDGSMLVHV IDFDIGLGGH  300
WASFMKELAD KAECRKANAP VLRITALVPE EYAVESRLIR ENLTQFAREL NIGFEIDFAL  360
IRTFELLSFK AIKFMEGEKT AVLLSPAIFR RVGSGFVNDL RRISPNVVVH VDSEGLMGYN  420
AMSFRQTVID GLEFYSTLLE SLEAANIGGG NCGDWMRKIE NYVLFPKIVD MVAAIGRRGV  480
GFGGGGSWKD AMVGAGFRPM GLSQFADFQA DCLLGRVQVR GFHVAKRQAE MLLCWHDRAL  540
VATSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2719054627378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177940.0EF517794.1 Solanum bulbocastanum BAC 27I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560585.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-144SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2G3AAH70.0A0A2G3AAH7_CAPAN; Scarecrow-like protein 15
TrEMBLA0A2G3D7Q60.0A0A2G3D7Q6_CAPCH; Scarecrow-like protein 15
STRINGPGSC0003DMT4000330370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-144GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]