PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g22550

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ERF

Protein Properties

Length: 210aa MW: 23223.8 Da PI: 9.9065

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g22550	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.8	1.1e-17	40	89	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeI+dp++ r++lg+f +aeeAa+a++ +++++g CA02g22550 40 QYRGIRQRP-WGKWAAEIHDPRK---GIRVWLGTFNSAEEAARAYDVEARRIRG 89 6******.******954...3**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.72E-30	40	98	No hit	No description
SMART	SM00380	7.3E-37	40	103	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.38	40	97	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-21	40	98	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.3E-31	40	98	IPR001471	AP2/ERF domain
Pfam	PF00847	6.6E-11	41	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-11	41	52	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-11	63	79	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MFGASALCFS LFHFLGSKSV KSGNSNCDAE KSSKRKRKNQ YRGIRQRPWG KWAAEIHDPR 60 KGIRVWLGTF NSAEEAARAY DVEARRIRGK KAKVNFPDGS PASASRRVVK PNPQEALREE 120 ILNTVQPNTT YSNNLDGRSD DSFGVFEEKL AAKQYGYENV SFTAGDKGLG SISPSTGTTN 180 VYFRSDDGSN TFDCFDFGWG EPCPRTPTK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-20	40	97	5	63	ATERF1
3gcc_A	6e-20	40	97	5	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF169944	0.0	KF169944.1 Capsicum chinense cultivar habanero jasmonic acid and ethylene responsive factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312013.1	1e-127	ethylene-responsive transcription factor RAP2-12
Swissprot	Q6K7E6	5e-42	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	A0A2G3AAI0	1e-154	A0A2G3AAI0_CAPAN; Ethylene-responsive transcription factor RAP2-12
STRING	PGSC0003DMT400012547	1e-112	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1446	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14230.1	2e-39	related to AP2 2

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]