PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g21940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | SRS | ||||||||
Protein Properties | Length: 206aa MW: 22315.4 Da PI: 8.1197 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 224.5 | 2.1e-69 | 6 | 167 | 3 | 155 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.........kskkqsalsstkl 91 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thv+stWvpaakrrerq+qla++++++++++ ++++++++r+l + ++s+l +t++ CA02g21940 6 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQNQLATLQHHQEEEQhQQQQQQETRQLhrdnpkrlrEDPSASSLVCTRI 104 5789*****************************************************999888774333333333335566666544455667777776 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 + s++ le+ ++P++v s+avf+cvr+ssvdd+e+++aYqtav+igGhvfkGiLydqG+e++ CA02g21940 105 LPS-STSGLEVGNFPAKVTSNAVFHCVRMSSVDDAEDQFAYQTAVNIGGHVFKGILYDQGPENQ 167 665.455899999************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.6E-66 | 8 | 165 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.3E-27 | 10 | 52 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.3E-27 | 117 | 164 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MMRSGGGGIS CQDCGNQAKK DCQHMRCRTC CKSRGFQCQT HVRSTWVPAA KRRERQNQLA 60 TLQHHQEEEQ HQQQQQQETR QLHRDNPKRL REDPSASSLV CTRILPSSTS GLEVGNFPAK 120 VTSNAVFHCV RMSSVDDAED QFAYQTAVNI GGHVFKGILY DQGPENQYMA AGESSSGGGS 180 ASHQHNLIGA AGTSTSAATS GXCST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC331912 | 0.0 | KC331912.1 Solanum lycopersicum expression of terpenoids 3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016560706.1 | 1e-148 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | K4B6C9 | 4e-78 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A2G3AAR0 | 1e-150 | A0A2G3AAR0_CAPAN; Protein SHI RELATED SEQUENCE 5 | ||||
STRING | Solyc02g084680.2.1 | 1e-102 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 4e-67 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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