PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g20290

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 633aa MW: 72552.5 Da PI: 6.2685

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g20290	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.8	1.7e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv +yLk+k+++kk+el e+i+evd+yk+ePw+Lp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s ++ CA02g20290 6 LPPGFRFHPTDEELVAYYLKRKINNKKIEL-EIIPEVDLYKCEPWELPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QT 102 79**************************.99***********6434555777**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLv+y+grap+g +tdWvmheyrl CA02g20290 103 RAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	4	155	IPR003441	NAC domain
PROSITE profile	PS51005	60.971	6	156	IPR003441	NAC domain
Pfam	PF02365	3.5E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKINN KKIELEIIPE VDLYKCEPWE LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKRSLNN NGPKIGEKYY GSAAISDRSS 180 SIDQVYSEGR GDLHDIESSH DHEYGIMPSS SSSSMAVHGS PINTNASALT DDRWMQYLSN 240 EAFTFNNNNT AQPIPNYGTL PFLPSKVDIA LECARLQHRF TLPPLEIQDF PQVGYVDHDA 300 KMPQSSFINQ DSWGGNSNLC APIDDFSFLI PPNNNQIHHD LSSFNFMEQD DNVIRSIDIG 360 DFDHEDFKSD RMVENLRWIG MSNRDLEKKF FEDYKTVPID NVSSVQRDHE FQAENSGQNN 420 SFNSGLNETE ANNFSMGFGN DNLLGDGDVT DGFSSCPSFQ VYGKIEVNHG FFIATRQASK 480 TFYHQVTPSR TLTIHRNLVP LHDFPKNRAP HDNFVTKVTR PWTTTMRTLV SMVAILQTLW 540 LYVGECLELE EKGFKLEDKK GIYEECCLIE RVEKKKVEDF KWDIYKQSKF PIGDKDEGIK 600 YCCYLEKKWP NYLTLVVALS SIWLHHIIVP SF*

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKINN KKIELEIIPE VDLYKCEPWE LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKRSLNN NGPKIGEKYY GSAAISDRSS  180
SIDQVYSEGR GDLHDIESSH DHEYGIMPSS SSSSMAVHGS PINTNASALT DDRWMQYLSN  240
EAFTFNNNNT AQPIPNYGTL PFLPSKVDIA LECARLQHRF TLPPLEIQDF PQVGYVDHDA  300
KMPQSSFINQ DSWGGNSNLC APIDDFSFLI PPNNNQIHHD LSSFNFMEQD DNVIRSIDIG  360
DFDHEDFKSD RMVENLRWIG MSNRDLEKKF FEDYKTVPID NVSSVQRDHE FQAENSGQNN  420
SFNSGLNETE ANNFSMGFGN DNLLGDGDVT DGFSSCPSFQ VYGKIEVNHG FFIATRQASK  480
TFYHQVTPSR TLTIHRNLVP LHDFPKNRAP HDNFVTKVTR PWTTTMRTLV SMVAILQTLW  540
LYVGECLELE EKGFKLEDKK GIYEECCLIE RVEKKKVEDF KWDIYKQSKF PIGDKDEGIK  600
YCCYLEKKWP NYLTLVVALS SIWLHHIIVP SF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-53	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-53	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-53	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-53	1	156	12	165	NO APICAL MERISTEM PROTEIN
3ulx_A	7e-53	2	133	11	140	Stress-induced transcription factor NAC1
4dul_A	6e-53	1	156	12	165	NAC domain-containing protein 19
4dul_B	6e-53	1	156	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-170	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562105.1	0.0	PREDICTED: NAC domain-containing protein 86
TrEMBL	A0A2G3A9A7	0.0	A0A2G3A9A7_CAPAN; NAC domain-containing protein 53
STRING	Solyc02g081270.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-123	NAC domain containing protein 28