PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g19940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 437aa MW: 49946.5 Da PI: 6.3929 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00089 | 155 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H CA02g19940 155 YVCSVCGRKCKTHLDLKKHFKQlH 178 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 7.8E-5 | 75 | 145 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 11.011 | 155 | 183 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0078 | 155 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 157 | 178 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 1.02E-10 | 169 | 309 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 7.8E-5 | 240 | 297 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MSSVFDSIEP LHLKVSSFLP ISLSTKHPNL HPLTLSFRTN SQIAPCKPIK WHISACAAGQ 60 EIDMERTKEG LYTAKPKKVV ILWDLDNKPP RGPPYEAAMS LKKVAQCFGE VVDMSAYANR 120 HAFIHLPRWV VEQRRERRHL DILERKGVVT PSEPYVCSVC GRKCKTHLDL KKHFKQLHER 180 EREKKLSRMR SLKGKKRQRF KERFVDGNYK YREAAKSLIT PKVGYGLASE LRRAGVYVKT 240 VADKPQAADW ALKKQIKHSM SRGIDWLFLI SDDSDFCAML RRAKEANLGT VVVGDWDGAL 300 GRHADLWVPW NGVENGEITE KDLVLKTERR KESWDRSNAR FSVSEFNGRV REEDTSLGSL 360 MDDIVEDLKS SGTRISAFSE GEEDEEFEEL DEEDWLRARL DQPGDDEYNT EDSIVSDEEE 420 GGYLLDSEDE DTGEMV* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215450 | 0.0 | AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016560373.1 | 0.0 | PREDICTED: uncharacterized protein LOC107859780 | ||||
TrEMBL | A0A1U8FVB1 | 0.0 | A0A1U8FVB1_CAPAN; uncharacterized protein LOC107859780 | ||||
TrEMBL | A0A2G3A9P1 | 0.0 | A0A2G3A9P1_CAPAN; Uncharacterized protein | ||||
STRING | XP_009623477.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12268 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-157 | C2H2-like zinc finger protein |