PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g19920
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 300aa    MW: 33167.1 Da    PI: 4.5356
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g19920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61e-156441250
                HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 f k +++i KK  ELSvLCd++v+ i+++++g++ +++
  CA02g19920  6 NFKKKKETIVKKTRELSVLCDVKVCAILVAPNGEVDTWP 44
                599***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0051146IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.208147IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-13364IPR002100Transcription factor, MADS-box
PfamPF003192.8E-11543IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKKASNFKKK KETIVKKTRE LSVLCDVKVC AILVAPNGEV DTWPENPTEL NPIIQSYKEH  60
VVAGKRKVID GGLFKNKSKS NNVALFCDNG DDDEWIKNLS RDSKQSLLVK LNTKLAAVEK  120
RIEFLKMGSV ISSSSRGKQV VANGDQLSSE KQVVGANQEN YNVGCDEYWG SSFAINDDQL  180
GKTSTAYNQE TDIVMTSEFN CSAYNQDQEV GGSMGHEGQL MEEVGGSMGH EVQLMVTSNE  240
MNMWENFEWD DVWSIINGPD LEFDLLTKGA TGFGTSLNQQ TIVNDGSNPN YDYFIPLSN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327036e-32AC232703.2 Solanum lycopersicum chromosome 05 clone C05HBa0190L02, complete sequence.
GenBankHG9755176e-32HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560375.10.0PREDICTED: agamous-like MADS-box protein AGL81
TrEMBLA0A2G3A9P50.0A0A2G3A9P5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000479191e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1595856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37415.14e-09AGAMOUS-like 105