PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g19560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 38724.5 Da PI: 7.1656 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.6e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G +W+++++ g+ R++k+c++rw +yl CA02g19560 13 RGLWSPEEDEKLIKHITTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.5e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ CA02g19560 66 RGCFSEQEERIIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.251 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-10 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.074 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.48E-11 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLIKHITT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGCFS EQEERIIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGF 120 DPNTHNLLSR AAAAAATPPH RNNKKKTNNN HTTSSVFTIE TSLSPSSTKE LVSMDMIKAS 180 LAALSPFPHT NSSTTVLTMP QFQTSWSHLY ESACNYYNHV PIKTNIVYQN HSTSTGTFGI 240 INENCMWGVT GFEPHHEFGP SNNIGHEEMQ QGAQVQLQEE HCLEEVYKVN DLHEFNKHGR 300 IAENVTFDDS SDFDFEFVDS ELIPCGIYTN VNSIDQLAWD C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF477956 | 0.0 | AF477956.1 Capsicum annuum transcription factor Myb mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311738.1 | 0.0 | protein ODORANT1-like | ||||
TrEMBL | A0A2G3A9F9 | 0.0 | A0A2G3A9F9_CAPAN; Transcription factor MYB26 | ||||
STRING | PGSC0003DMT400018897 | 1e-180 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 4e-83 | myb domain protein 67 |