PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g18700
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TALE
Protein Properties Length: 351aa    MW: 39281.3 Da    PI: 6.2338
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g18700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-092773112155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++++  LA+++gL+++q+ +WF N+R ++
  CA02g18700 277 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 311
                 569*****************************885 PP
2ELK41.23.5e-14231252122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK qLlrKYsgyLgsLkqEF+
  CA02g18700 231 ELKGQLLRKYSGYLGSLKQEFM 252
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.0E-2190134IPR005540KNOX1
PfamPF037907.9E-2392131IPR005540KNOX1
SMARTSM012561.3E-25141192IPR005541KNOX2
PfamPF037913.3E-21145191IPR005541KNOX2
PfamPF037895.8E-11231252IPR005539ELK domain
PROSITE profilePS5121311.174231251IPR005539ELK domain
SMARTSM011882.8E-8231252IPR005539ELK domain
PROSITE profilePS5007112.957251314IPR001356Homeobox domain
SuperFamilySSF466891.71E-19253328IPR009057Homeodomain-like
SMARTSM003891.2E-12253318IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-28256316IPR009057Homeodomain-like
CDDcd000862.07E-12263315No hitNo description
PfamPF059208.3E-17271310IPR008422Homeobox KN domain
PROSITE patternPS000270289312IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEGGSNGNNT SCLMMMGYGD HDTNNNNNSG SGTLCTPPMM MMMMPPPPTS LTNNNNAETS  60
NNNHNILILP FMDNNNPHED HGNSSSSSTS SIKSKIMAHP HYPRLLAAYI NCQKIGAPPE  120
VVARLEELCA TSTAMGRTSG GGGIVGEDPA LDQFMEAYCE MLTKYEQELS KPFKEAMVFL  180
SRIECQFKAL TLAANSSHES ALGEAMDRNG SSDEEVDVNN GFVDPQAEDR ELKGQLLRKY  240
SGYLGSLKQE FMKKRKKGKL PKEARQQLLD WWTRHYKWPY PSESQKLALA ESTGLDQKQI  300
NNWFINQRKR HWKPSEDMQF VVMDAAHPHN YYMDNVLANH FPMDMTPSLL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246255LKQEFMKKRK
2252256KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560169.10.0PREDICTED: homeobox protein knotted-1-like LET6 isoform X2
SwissprotO222991e-170LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA0A2G2XFU80.0A0A2G2XFU8_CAPBA; Homeobox protein SHOOT MERISTEMLESS
STRINGPGSC0003DMT4000430830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-137KNOX/ELK homeobox transcription factor