PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g16520

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 956aa MW: 104432 Da PI: 5.3274

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g16520	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.1	3.4e-18	281	380	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l+ sd+++ grlvlpkk+ae++ ++++e++ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+v+F++++ e++lv++ CA02g16520 281 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISNPEGVPLKMKDLKGNEWMFQFRFwpNNNSRMYVLE-GVTPCIQLMQLQAGDIVTFSRIE-PEGKLVMG 377 89************************666678899***********99899999999.*******************887.78888888 PP EE- CS B3 96 vfr 98 ++ CA02g16520 378 GRK 380 776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.9E-29	277	381	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.03E-19	278	376	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.68E-22	279	380	No hit	No description
Pfam	PF02362	2.8E-15	281	380	IPR003340	B3 DNA binding domain
SMART	SM01019	5.9E-20	281	382	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.419	281	382	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.718	535	585	IPR011124	Zinc finger, CW-type
Pfam	PF07496	7.2E-10	540	582	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MVYNSSSAYD DGKFCETFHL NSSGWRSCES CGKQIHCGCI VSFHTFVLLD AGGIECISCA 60 RKSFILPERI KDVNSWNPIA GSGPVPWRQA PSLFNGSTFQ NELQHKVPFP DATGSIDRLS 120 LGERPSASLS EINRKDCCEK LMTGKLKIGV PGTLENGYAG LNREEPQSCI SGPRQLSYAS 180 NDLSAPSFGL TVGSACNYEP TDHSKVSVSV PQQTTVSNSL GKQLGGHATV DSAGETQVRN 240 SKIRGDGRGK HHLLPRYWPR ITDEELQRLS EDSNSVITPL FEKMLSASDA GRIGRLVLPK 300 KCAEAYFPPI SNPEGVPLKM KDLKGNEWMF QFRFWPNNNS RMYVLEGVTP CIQLMQLQAG 360 DIVTFSRIEP EGKLVMGGRK ASTILTTDQG SEAFCNGNGV TTNGNVITKS SKFSEEVRAN 420 STKKGFSSTT HVAATSARAE TKMSDDLVKE SLGNNRSIHC KRKGSMLGSK RKRLRIDNED 480 LVDLKVTVVQ AQGLMRPPSS GAPTVIVIEG CEIEEYEQAD APIIGRPTIP HMDHLGEKIQ 540 WIQCEDCFKW RKVPDDAVLP SRWTCSENSR DPERSVCSAV QELTADHLRD LLPHIDKGIS 600 KMKASTQEMD LVEALDGLDA LANLAILDEG ETPPASSQAT TKHPRHRPGC TCIVCIQPPS 660 GKGPKHDQSC DCNVCKSVKR RFKTLMLKRE KKLSEKEAEA TCQKLQPQLS GQLLDADDIQ 720 ESIDDTAHFS PQHGEELNNE GSVDDPNYLN EKKSPVDDPN YLNEKKSLVD DSNYLNDKKS 780 PDDDPNCRNE KKSSVDDPDY PYEKSSVDDP DSLAEKKSSD DDPDSLAEKK SSDDDSNSLA 840 EKKSSDDDSN SLAEKKSSAS PFKGEIDLNA KPERDDELSP GSDSGSMMRI LKDAAEQYVR 900 HCGNGSSVDN QKSGDGAGET NSSNCVVVSA SHQPDVDHNR PLPIGTAASL APNDQ*

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MVYNSSSAYD DGKFCETFHL NSSGWRSCES CGKQIHCGCI VSFHTFVLLD AGGIECISCA  60
RKSFILPERI KDVNSWNPIA GSGPVPWRQA PSLFNGSTFQ NELQHKVPFP DATGSIDRLS  120
LGERPSASLS EINRKDCCEK LMTGKLKIGV PGTLENGYAG LNREEPQSCI SGPRQLSYAS  180
NDLSAPSFGL TVGSACNYEP TDHSKVSVSV PQQTTVSNSL GKQLGGHATV DSAGETQVRN  240
SKIRGDGRGK HHLLPRYWPR ITDEELQRLS EDSNSVITPL FEKMLSASDA GRIGRLVLPK  300
KCAEAYFPPI SNPEGVPLKM KDLKGNEWMF QFRFWPNNNS RMYVLEGVTP CIQLMQLQAG  360
DIVTFSRIEP EGKLVMGGRK ASTILTTDQG SEAFCNGNGV TTNGNVITKS SKFSEEVRAN  420
STKKGFSSTT HVAATSARAE TKMSDDLVKE SLGNNRSIHC KRKGSMLGSK RKRLRIDNED  480
LVDLKVTVVQ AQGLMRPPSS GAPTVIVIEG CEIEEYEQAD APIIGRPTIP HMDHLGEKIQ  540
WIQCEDCFKW RKVPDDAVLP SRWTCSENSR DPERSVCSAV QELTADHLRD LLPHIDKGIS  600
KMKASTQEMD LVEALDGLDA LANLAILDEG ETPPASSQAT TKHPRHRPGC TCIVCIQPPS  660
GKGPKHDQSC DCNVCKSVKR RFKTLMLKRE KKLSEKEAEA TCQKLQPQLS GQLLDADDIQ  720
ESIDDTAHFS PQHGEELNNE GSVDDPNYLN EKKSPVDDPN YLNEKKSLVD DSNYLNDKKS  780
PDDDPNCRNE KKSSVDDPDY PYEKSSVDDP DSLAEKKSSD DDPDSLAEKK SSDDDSNSLA  840
EKKSSDDDSN SLAEKKSSAS PFKGEIDLNA KPERDDELSP GSDSGSMMRI LKDAAEQYVR  900
HCGNGSSVDN QKSGDGAGET NSSNCVVVSA SHQPDVDHNR PLPIGTAASL APNDQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-60	259	382	2	125	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215441	0.0	AC215441.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0329G05, complete sequence.
GenBank	AC215472	0.0	AC215472.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0019I01, complete sequence.
GenBank	AC215491	0.0	AC215491.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0114O11, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559969.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300 isoform X3
Swissprot	Q0D5G4	1e-172	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A2G3D5T0	0.0	A0A2G3D5T0_CAPCH; Uncharacterized protein
STRING	Solyc02g079020.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7128	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-134	HSI2-like 1