PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g15750

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 278aa MW: 31358.1 Da PI: 5.1405

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g15750	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111	5.5e-35	40	97	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + lkcprCds ntkfCyynny+ sqPr++Ck+C+r+Wt+GG+lrnvPvGggr++++ CA02g15750 40 PEPLKCPRCDSINTKFCYYNNYNKSQPRHYCKGCKRHWTEGGTLRNVPVGGGRKNKRM 97 6789***********************************************9776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-23	36	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-31	42	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.046	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGLSTKLVSI DDDGLDDWTC SSQNSLPEPP LIRRQPPSKP EPLKCPRCDS INTKFCYYNN 60 YNKSQPRHYC KGCKRHWTEG GTLRNVPVGG GRKNKRMRMT TDLVDHITGR KRVTLEEMND 120 QRCPLISTTI TNTTTSSMPS TIISNMDEDI KNIPSLASSS LPYDIFSSLK LSSIPQDGNT 180 HFSLIPNSST TQLSSNVYCN YDYMGKFDST MEESTITTVM PITSSSDLFS QPWKVPETSN 240 DFIIENMSSN YWNWNEFDTL STAADLNIQW DDLEIKP*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-107	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562070.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A1U8FTC7	0.0	A0A1U8FTC7_CAPAN; Uncharacterized protein
TrEMBL	A0A2G3A8P3	0.0	A0A2G3A8P3_CAPAN; dof zinc finger protein DOF4.6-like
STRING	PGSC0003DMT400057782	1e-141	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-29	Dof family protein