PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g15520

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 291aa MW: 33066.6 Da PI: 8.4614

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g15520	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.9	1.2e-33	58	198	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWka 85 lp+G++F+P+d e++ e+L++k+ +++++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + +W++ CA02g15520 58 LPAGVKFDPSDGEIL-EHLEAKILSDTHKIHPliddfilTIDGQnGICYTHPQKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVDteidggETRWHK 154 799*********9.99*99995553344444433665546******.566677888**************743346555778* PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tgk+++v+ +g ++g kk+Lv+y gr++k+ekt+Wvmh+y+l CA02g15520 155 TGKTRPVYM-GGVVKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 198 *******.**********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-39	50	217	IPR003441	NAC domain
PROSITE profile	PS51005	32.974	58	217	IPR003441	NAC domain
Pfam	PF02365	3.7E-14	59	198	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MTWCNQSKGE IALPVISSLE ENNVMMIDSR TRLITCPSCG HTIQLQHQRD ILHDLPGLPA 60 GVKFDPSDGE ILEHLEAKIL SDTHKIHPLI DDFILTIDGQ NGICYTHPQK LPGVSKDGQV 120 RHFFHRPSKA YTTGTRKRRK VDTEIDGGET RWHKTGKTRP VYMGGVVKGY KKILVLYTNY 180 GRQRKPEKTN WVMHQYHLGE NEEEKDGELV VSKVFYQTQP RQCGSLNIKK PLVDHHNPIM 240 KTTNFVDYYN PNPFISYNVE SQSSPQIIQN LVVHGDSSPF VIPSEANKEK *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564936.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-112	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1U8G0N4	0.0	A0A1U8G0N4_CAPAN; NAC domain-containing protein 10
TrEMBL	A0A2G3A8A1	0.0	A0A2G3A8A1_CAPAN; NAC domain-containing protein 73-like
STRING	PGSC0003DMT400081229	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-114	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]