PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g15480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HB-other
Protein Properties Length: 1794aa    MW: 202519 Da    PI: 7.3204
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g15480genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-182479257
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 kR+  t+ qle+Le++++++ yps++ r+eL++klgLt+rq ++WF+ rR k+k+
  CA02g15480 24 PKRQMKTPFQLETLERVYAMETYPSEAIRAELSEKLGLTDRQLQMWFCHRRLKDKN 79
                69***************************************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-17979IPR009057Homeodomain-like
SuperFamilySSF466891.84E-161279IPR009057Homeodomain-like
PROSITE profilePS5007116.0342080IPR001356Homeobox domain
SMARTSM003897.7E-182284IPR001356Homeobox domain
PfamPF000464.0E-162478IPR001356Homeobox domain
CDDcd000865.61E-142581No hitNo description
PROSITE profilePS5082715.731510569IPR018501DDT domain
SMARTSM005715.4E-20510569IPR018501DDT domain
PfamPF027913.4E-16512566IPR018501DDT domain
PfamPF050661.3E-12691758IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156124.3E-5900943IPR028942WHIM1 domain
PfamPF156139.2E-1410711143IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1794 aa     Download sequence    Send to blast
MDGGSEGEGN KNVNMSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA IRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GVTGVKRNAM ESPREDLMVA EAASDRGSGS  120
VSRSGSGSGS GSSRFDNGDD MPTKPIRHYE SPRRAMERRV IACIETQLRE TLREDGPIIG  180
VEFDELPPGA FGSPIDFGER GDRYRHSYDS KLYGPYDAKV SVGTTLSLSP VLTSGHREPA  240
EPKIVSDKYG QIAAPYLYDS PVDGPSKNAP IMQGNGHFAR EYGVEGQNIG VMSQQGRQGH  300
FPSPQQDNKF VSSNEDFLQL DRKRKSEDTR IGRDVQVNEK RIRKELEKQD LLRRKREEQM  360
KKDMEKQDRE RRKEELRLMR EQQRKEERYQ REEKRELERR ERFMQKELLR AERKKQKEEL  420
RKEREAAKQK AAMEKAMARR IAKESMELIE DERLELMDLA ASSKGLPSIA SLNYDALQNL  480
DSFRESLCEF PPKSVQLKKP FSIQPWIASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF  540
LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYNAINPEG GHPQIVEGAY  600
LWGFDIRNWQ KHLNPLTWSE VLRQFALSAG FGPPLKKKSE RTCLNDSDET KGCEDIVSTL  660
RSGSAAENAV AIMQEKGYMS QRKSRHRLTP GTVKFAAYHV LALEGDKGLN VLDIAERIQK  720
SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIL  780
RYANGFLSGQ NVEDEERDDD SEGDAAEGPE VDDLGTPYGV NKNSEQLLDT CLVNGKSKLS  840
DEVARQIGVD VVGKDVVLTT DVFLCFICFF YKNVKAECST SCIEGSNPSQ ECSEIDESKA  900
GEPWVQGLTE GEYSDLCVEE RLSALVSLIG IANEGNSIRA ILEDRLDAAN ALKKQMWAES  960
QLDKRRLKEE TVNRFNDSSF NAVVEGSQSP LGFTNNKNQG TSPTTLVKDE SAVIVGNVQN  1020
HFESILAEKS SAAQETFVGQ FAVPSGNTAE RSRMQLKSFI GHKAEEMYVY RSLPLGQDRR  1080
RNRYWLFVAS GSSQDPGSGR IFFESPQGCW RLIDTEEAFD RLLASLDTRG IRESHLHIML  1140
QKIEGPFKER VWRNMSYGDN VGQHGSKYRN KSSAVSSSPA CGASAYSPKS TIYGVSSDSW  1200
ETSLSFKIEF GKNEEEKRNA LMRYQGFQIW MWKECLRSSI VRALRYGKKR SLSLLGLCGH  1260
CLESYLSEEG ICPSCNKMSS KVDMNAEFLE QAMDSMDNMK FDCNSLMVSN ACPLRVRLMK  1320
AVLSFLEVYV PYEALQSSWT EDCRKTWGMK LQYSSSPEDL LQILIQLEGA IKRDYLSADY  1380
ETAEELMGLC ASSRNAACAS TYESVPQLPW IPHTTAAVAL RLLELDASIS YDPQQKTEVE  1440
LKNKVDCLPK PSLGYSSLKG LQKVEPTEID HDGPLREENW DYLSNLPSSS RSRQVVRGRG  1500
GGRPRKLQKG TASKLSESGR AVVRPTETLT QVLIKQGETH GQRHVRGRRT VRKRRIDNKI  1560
VEETQPDYLG DRSSRLSLVV SPRKLVREEF DMNVEGIEAT NDNSMSMEAA ESDDSAPENT  1620
YEIRLFMPVM ALKMTRRRKR TTMTLIMTMM IDTEAMVKIW KDTLTWMTTT QIEMGMSMRT  1680
KSWILQSLKI IVIEVAKIFG GALDNCSIAL MFDRRRTKVW CECDCILFLF LISFWRNFDS  1740
FKMKPWSWLV SVYSVKGADF VTFYRHSRCQ NSIKLVSPCS NTAVQYGAVG DQK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559820.10.0PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
TrEMBLA0A2G3A8A80.0A0A2G3A8A8_CAPAN; Uncharacterized protein
STRINGSolyc02g077660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21422352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1