PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g15480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HB-other | ||||||||
Protein Properties | Length: 1794aa MW: 202519 Da PI: 7.3204 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 24 | 79 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps++ r+eL++klgLt+rq ++WF+ rR k+k+ CA02g15480 24 PKRQMKTPFQLETLERVYAMETYPSEAIRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 9 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.84E-16 | 12 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.034 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.7E-18 | 22 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.0E-16 | 24 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.61E-14 | 25 | 81 | No hit | No description |
PROSITE profile | PS50827 | 15.731 | 510 | 569 | IPR018501 | DDT domain |
SMART | SM00571 | 5.4E-20 | 510 | 569 | IPR018501 | DDT domain |
Pfam | PF02791 | 3.4E-16 | 512 | 566 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.3E-12 | 691 | 758 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 4.3E-5 | 900 | 943 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 9.2E-14 | 1071 | 1143 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1794 aa Download sequence Send to blast |
MDGGSEGEGN KNVNMSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA IRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GVTGVKRNAM ESPREDLMVA EAASDRGSGS 120 VSRSGSGSGS GSSRFDNGDD MPTKPIRHYE SPRRAMERRV IACIETQLRE TLREDGPIIG 180 VEFDELPPGA FGSPIDFGER GDRYRHSYDS KLYGPYDAKV SVGTTLSLSP VLTSGHREPA 240 EPKIVSDKYG QIAAPYLYDS PVDGPSKNAP IMQGNGHFAR EYGVEGQNIG VMSQQGRQGH 300 FPSPQQDNKF VSSNEDFLQL DRKRKSEDTR IGRDVQVNEK RIRKELEKQD LLRRKREEQM 360 KKDMEKQDRE RRKEELRLMR EQQRKEERYQ REEKRELERR ERFMQKELLR AERKKQKEEL 420 RKEREAAKQK AAMEKAMARR IAKESMELIE DERLELMDLA ASSKGLPSIA SLNYDALQNL 480 DSFRESLCEF PPKSVQLKKP FSIQPWIASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF 540 LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYNAINPEG GHPQIVEGAY 600 LWGFDIRNWQ KHLNPLTWSE VLRQFALSAG FGPPLKKKSE RTCLNDSDET KGCEDIVSTL 660 RSGSAAENAV AIMQEKGYMS QRKSRHRLTP GTVKFAAYHV LALEGDKGLN VLDIAERIQK 720 SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIL 780 RYANGFLSGQ NVEDEERDDD SEGDAAEGPE VDDLGTPYGV NKNSEQLLDT CLVNGKSKLS 840 DEVARQIGVD VVGKDVVLTT DVFLCFICFF YKNVKAECST SCIEGSNPSQ ECSEIDESKA 900 GEPWVQGLTE GEYSDLCVEE RLSALVSLIG IANEGNSIRA ILEDRLDAAN ALKKQMWAES 960 QLDKRRLKEE TVNRFNDSSF NAVVEGSQSP LGFTNNKNQG TSPTTLVKDE SAVIVGNVQN 1020 HFESILAEKS SAAQETFVGQ FAVPSGNTAE RSRMQLKSFI GHKAEEMYVY RSLPLGQDRR 1080 RNRYWLFVAS GSSQDPGSGR IFFESPQGCW RLIDTEEAFD RLLASLDTRG IRESHLHIML 1140 QKIEGPFKER VWRNMSYGDN VGQHGSKYRN KSSAVSSSPA CGASAYSPKS TIYGVSSDSW 1200 ETSLSFKIEF GKNEEEKRNA LMRYQGFQIW MWKECLRSSI VRALRYGKKR SLSLLGLCGH 1260 CLESYLSEEG ICPSCNKMSS KVDMNAEFLE QAMDSMDNMK FDCNSLMVSN ACPLRVRLMK 1320 AVLSFLEVYV PYEALQSSWT EDCRKTWGMK LQYSSSPEDL LQILIQLEGA IKRDYLSADY 1380 ETAEELMGLC ASSRNAACAS TYESVPQLPW IPHTTAAVAL RLLELDASIS YDPQQKTEVE 1440 LKNKVDCLPK PSLGYSSLKG LQKVEPTEID HDGPLREENW DYLSNLPSSS RSRQVVRGRG 1500 GGRPRKLQKG TASKLSESGR AVVRPTETLT QVLIKQGETH GQRHVRGRRT VRKRRIDNKI 1560 VEETQPDYLG DRSSRLSLVV SPRKLVREEF DMNVEGIEAT NDNSMSMEAA ESDDSAPENT 1620 YEIRLFMPVM ALKMTRRRKR TTMTLIMTMM IDTEAMVKIW KDTLTWMTTT QIEMGMSMRT 1680 KSWILQSLKI IVIEVAKIFG GALDNCSIAL MFDRRRTKVW CECDCILFLF LISFWRNFDS 1740 FKMKPWSWLV SVYSVKGADF VTFYRHSRCQ NSIKLVSPCS NTAVQYGAVG DQK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016559820.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT1 isoform X1 | ||||
TrEMBL | A0A2G3A8A8 | 0.0 | A0A2G3A8A8_CAPAN; Uncharacterized protein | ||||
STRING | Solyc02g077660.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |