PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g15280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 25402.5 Da PI: 10.6897 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.6 | 3.6e-14 | 8 | 43 | 2 | 41 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaee 41 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+ee CA02g15280 8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEE 43 69*******.**********883....5***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.4E-18 | 8 | 43 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-7 | 8 | 43 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-12 | 8 | 43 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.17E-14 | 8 | 43 | No hit | No description |
SMART | SM00380 | 6.6E-9 | 8 | 50 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.158 | 8 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-9 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-9 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MASTREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEXXXXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB669080 | 1e-44 | AB669080.1 Nicotiana tabacum NtERF#116 gene for ethylene response factor #116, complete cds. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-22 | ERF domain protein 12 |