PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g15200

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 137aa MW: 15718.4 Da PI: 8.3918

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g15200	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	137.3	4.4e-43	52	127	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqve+C+ad+++ak yhrrhkvCe+hsk++ vl+sgl+qrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk + CA02g15200 52 CQVEQCTADMANAKPYHRRHKVCEFHSKSSIVLISGLQQRFCQQCSRFHLLAEFDEAKRSCRRRLAGHNERRRKIS 127 *************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	1.4E-56	1	136	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	2.6E-35	44	113	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.274	49	126	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.67E-39	50	130	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-32	52	125	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MDTNKWEGKR TINEAEEEED EHESVEEDNK RKRVLSPSGR KLSGGGSSHP SCQVEQCTAD 60 MANAKPYHRR HKVCEFHSKS SIVLISGLQQ RFCQQCSRFH LLAEFDEAKR SCRRRLAGHN 120 ERRRKISYDS QGESLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-39	43	125	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00290	DAP	Transfer from AT2G33810	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF141196	0.0	EF141196.1 Capsicum annuum squamosa promoter binding protein-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559832.1	1e-97	PREDICTED: squamosa promoter-binding protein 1-like isoform X1
Swissprot	Q38741	5e-58	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A1U8FKS8	3e-96	A0A1U8FKS8_CAPAN; Squamosa promoter-binding-like protein
STRING	Solyc02g077920.2.1	3e-82	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	1e-42	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]