PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g15190

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 355aa MW: 38453.6 Da PI: 8.5646

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g15190	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	30	88	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + CA02g15190 30 PHLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 88 5789****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.7E-33	31	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	32	86	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-28	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MMASNGSSSS NTRDMEKPIP DPSQQPPPPP HLKCPRCDSS NTKFCYYNNY SLSQPRHFCK 60 ACKRYWTRGG TLRNVPVGGG CRKNKRIKRP STNSSSSSSC TAHDIITTST PNISTLNPSH 120 HVAHNSIDIS STNSINPLFY GLTSERSDLN IPFARLFNSR VSSHATVGEG QVYSLTDSIP 180 GLMDRRMGLG FSNSSVGGVN IMGENNNYGH GGFNPIKQIQ DVVMTSNCTT SSTSLLSTYP 240 NMFGSSTSTS TMASLIASSL QQQKFMSNIN GNNFHNLAPN YEELQMSRGD NNNNNSNVHE 300 GGGNGITMLK AEKMDLSNHQ IHEQIINSSD PSLSWNGAWL DPSNMGSNSV PSLI*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MMASNGSSSS NTRDMEKPIP DPSQQPPPPP HLKCPRCDSS NTKFCYYNNY SLSQPRHFCK  60
ACKRYWTRGG TLRNVPVGGG CRKNKRIKRP STNSSSSSSC TAHDIITTST PNISTLNPSH  120
HVAHNSIDIS STNSINPLFY GLTSERSDLN IPFARLFNSR VSSHATVGEG QVYSLTDSIP  180
GLMDRRMGLG FSNSSVGGVN IMGENNNYGH GGFNPIKQIQ DVVMTSNCTT SSTSLLSTYP  240
NMFGSSTSTS TMASLIASSL QQQKFMSNIN GNNFHNLAPN YEELQMSRGD NNNNNSNVHE  300
GGGNGITMLK AEKMDLSNHQ IHEQIINSSD PSLSWNGAWL DPSNMGSNSV PSLI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559834.1	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A2G3A8C4	0.0	A0A2G3A8C4_CAPAN; Dof zinc finger protein DOF1.4
STRING	Solyc02g077950.1.1	1e-170	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-37	Dof family protein