PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g14560
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 167aa    MW: 18422.8 Da    PI: 8.0763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g14560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-172877255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  CA02g14560 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 77
                59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.7E-302886IPR001471AP2/ERF domain
SMARTSM003801.2E-362891IPR001471AP2/ERF domain
PROSITE profilePS5103221.9042885IPR001471AP2/ERF domain
PRINTSPR003673.2E-112940IPR001471AP2/ERF domain
PfamPF008478.8E-112977IPR001471AP2/ERF domain
CDDcd000184.65E-272987No hitNo description
SuperFamilySSF541711.11E-202986IPR016177DNA-binding domain
PRINTSPR003673.2E-116787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEVGGGGESG VTASSGVCCG GKRKSERPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PVAAARAYDT AVYYLRGPSA RLNFPELLVG DVGLNDLSAA SIRKKAIEVG AQVDAVQNSL  120
ANHHHHEHPQ EKLEAPSPSE LKPCWFQEKP DLNLKPEPED PELDYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1429851572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7115061e-129JN711506.1 Solanum tuberosum dehydration-responsive element-binding protein DREB3 (DREB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561035.11e-121PREDICTED: ethylene-responsive transcription factor RAP2-10
SwissprotQ9FH948e-53ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A1U8FQM81e-119A0A1U8FQM8_CAPAN; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A2G3A8421e-119A0A2G3A842_CAPAN; ethylene-responsive transcription factor RAP2-10
TrEMBLA0A2G3D8H21e-119A0A2G3D8H2_CAPCH; Ethylene-responsive transcription factor RAP2-10
STRINGPGSC0003DMT4000102281e-107(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-55DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]