PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g14000

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

G2-like

Protein Properties

Length: 367aa MW: 42721.9 Da PI: 8.7988

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g14000	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.1e-32	64	117	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+++LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ CA02g14000 64 PRLRWTPELHRSFVQAIQRLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 117 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-29	60	118	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.786	60	120	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-15	63	118	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.5E-24	64	119	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-9	65	116	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MIMENSSSSS IDLNEDNKGE SEEEEEEVIE VEDSSEKETE RISNYNSCDV EKKNVRQYVR 60 SKLPRLRWTP ELHRSFVQAI QRLGGQERAT PKLVLQMMNV RGLSIAHVKS HLQMYRSKKL 120 DESGQVLGRG NNRGMQGRGY FFRNHLGGQR YNPIQDFKMN GAIVLARNFN YDDHALKGHF 180 RNSFSRPPYQ SKGIISRYMQ WSSDNQGGLC NTTKSLQGED LLRMKSWQTP RQAVIEENGI 240 HDIVPIRSTQ FLEQKKWPPF IPNQWEEKRA DFCSAKNSHF WLQQNLGQPY SKWKYCRNNN 300 ALEQNLVTPF TFEMKQDKSP LEEKDWLPDL QLRLSRSTED KNESNRRDQS DINTMLSLSL 360 PTYSAT*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MIMENSSSSS IDLNEDNKGE SEEEEEEVIE VEDSSEKETE RISNYNSCDV EKKNVRQYVR  60
SKLPRLRWTP ELHRSFVQAI QRLGGQERAT PKLVLQMMNV RGLSIAHVKS HLQMYRSKKL  120
DESGQVLGRG NNRGMQGRGY FFRNHLGGQR YNPIQDFKMN GAIVLARNFN YDDHALKGHF  180
RNSFSRPPYQ SKGIISRYMQ WSSDNQGGLC NTTKSLQGED LLRMKSWQTP RQAVIEENGI  240
HDIVPIRSTQ FLEQKKWPPF IPNQWEEKRA DFCSAKNSHF WLQQNLGQPY SKWKYCRNNN  300
ALEQNLVTPF TFEMKQDKSP LEEKDWLPDL QLRLSRSTED KNESNRRDQS DINTMLSLSL  360
PTYSAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-19	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-19	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-19	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-19	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	8e-44	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562028.1	0.0	PREDICTED: uncharacterized protein LOC107861178
Refseq	XP_016562029.1	0.0	PREDICTED: uncharacterized protein LOC107861178
TrEMBL	A0A2G3A886	0.0	A0A2G3A886_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400026419	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5516	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	7e-36	G2-like family protein