PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g11990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27495.7 Da PI: 5.8243 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.1 | 1.2e-06 | 183 | 228 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ n Er+RR ++++ L+ ++P a +++ +++L +Av+Y+ksL CA02g11990 183 TTSNCSERKRR-KLKKMVKALKGIVPGA-----SRMNTVTVLDEAVRYLKSL 228 678999***98.7**************9.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.607 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.54E-9 | 183 | 233 | No hit | No description |
SuperFamily | SSF47459 | 1.3E-9 | 183 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-4 | 183 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-9 | 184 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-7 | 186 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MQSNYHFLTQ KPYVSLEDQA AGGNMFGIPP PSVYGTMALP TGLRSSVPFH GFEFQSSEAC 60 PKNFIIFDQT DYRSQIMYHP AMASKFPYPD LNYNSTCFQD GMEKKIANNE NTEVSSYLKE 120 DSDDINALLS LEEEEREEYD EEEVSTARTD ANYGSSSPES YSNYDCQSKK SRTSSFRKCS 180 GSTTSNCSER KRRKLKKMVK ALKGIVPGAS RMNTVTVLDE AVRYLKSLKV EVQKLGVENL 240 KTFA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016556257.1 | 0.0 | PREDICTED: transcription factor bHLH144-like | ||||
TrEMBL | A0A1U8FAB2 | 0.0 | A0A1U8FAB2_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3A7K8 | 0.0 | A0A2G3A7K8_CAPAN; transcription factor bHLH144-like | ||||
STRING | XP_009595499.1 | 1e-143 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8124 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 2e-33 | bHLH family protein |