PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA02g11070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26709.8 Da PI: 5.9802 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 103 | 152 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+W+AeIr p + +r +lg+f tae+Aa+a+++ + +++ge CA02g11070 103 FRGVRQRP-WGKWAAEIRNP-----HkaQRLWLGTFATAEDAARAYDKKAVEFRGE 152 8*******.**********7.....337************************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.38 | 102 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-31 | 102 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-34 | 102 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.24E-30 | 103 | 160 | No hit | No description |
PRINTS | PR00367 | 7.7E-11 | 103 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 103 | 160 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-11 | 103 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-11 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MNNDCTLPTH KLTRNQEHHY MVSALYHVLS GTDDCRMDGE PAQLLREVQN VSTSDNSMPR 60 RDIIMDSDSV QPGASSYHIG NSLNVELQQG KKRRGRRNTK KEFRGVRQRP WGKWAAEIRN 120 PHKAQRLWLG TFATAEDAAR AYDKKAVEFR GEKAKTNFPI EEYIDGVVTN DQNKTPMVVV 180 EDEEAVQNVM NGAEVAAVGA VNNTKNAVEN GMENDKDDFW ENLEEDGLVK MITRTC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 101 | 160 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-63 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016554669.1 | 1e-161 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
TrEMBL | A0A2G3A6X8 | 1e-177 | A0A2G3A6X8_CAPAN; Ethylene-responsive transcription factor | ||||
STRING | PGSC0003DMT400010297 | 2e-77 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33710.2 | 2e-28 | ERF family protein |